Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5853

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14220 and 14221 are separated by 125 nucleotides14221 and 14222 are separated by 296 nucleotides mRNA_5852: 14220 - K14856 SDA1, SDAD1 protein SDA1, at 1,085,996 to 1,089,150 14220 mRNA_5853: 14221 - K15378 SLC45A1_2_4 solute carrier family 45, member 1/2/4, at 1,089,276 to 1,092,744 14221 mRNA_5854: 14222 - K12826 SF3A2, SAP62 splicing factor 3A subunit 2, at 1,093,041 to 1,094,048 14222

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,089,277 + +0.5
1,089,325 + +2.4
1,089,601 - -0.7
1,089,893 + 14221 mRNA_5853 0.18 +0.2
1,089,910 - 14221 mRNA_5853 0.18 +2.5
1,090,092 - 14221 mRNA_5853 0.24 +0.2
1,090,210 + 14221 mRNA_5853 0.27 +0.3
1,090,350 + 14221 mRNA_5853 0.31 -0.1
1,091,661 + 14221 mRNA_5853 0.69 +2.0
1,091,942 - 14221 mRNA_5853 0.77 -1.9
1,091,962 - 14221 mRNA_5853 0.77 -1.1
1,092,154 - 14221 mRNA_5853 0.83 -0.3
1,092,406 + -0.3
1,092,560 + +0.7
1,092,692 - +1.1

Or see this region's nucleotide sequence