Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5866

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14233 and 14234 are separated by 284 nucleotides14234 and 14235 are separated by 222 nucleotides mRNA_5865: 14233 - KOG0800 FOG Predicted E3 ubiquitin ligase, at 1,117,097 to 1,118,879 14233 mRNA_5866: 14234 - KOG1454 Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily), at 1,119,164 to 1,122,161 14234 mRNA_5867: 14235 - K02950 RP-S12, MRPS12, rpsL small subunit ribosomal protein S12, at 1,122,384 to 1,123,037 14235

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,118,367 - 14233 mRNA_5865 0.71 -0.6
1,118,483 - 14233 mRNA_5865 0.78 +0.2
1,118,495 - 14233 mRNA_5865 0.78 +1.3
1,119,040 - +0.5
1,119,370 + -0.7
1,119,373 + +1.4
1,119,384 + -1.2
1,119,829 + 14234 mRNA_5866 0.22 +1.9
1,119,943 + 14234 mRNA_5866 0.26 +0.7
1,120,115 - 14234 mRNA_5866 0.32 +2.2
1,120,243 + 14234 mRNA_5866 0.36 +0.9
1,120,258 - 14234 mRNA_5866 0.36 +0.7
1,120,559 - 14234 mRNA_5866 0.47 -0.8
1,121,428 + 14234 mRNA_5866 0.76 +0.1
1,121,445 - 14234 mRNA_5866 0.76 +0.8
1,121,726 + 14234 mRNA_5866 0.85 -0.7
1,121,887 - -1.4
1,122,196 + +3.8
1,122,198 + -2.3
1,122,199 + +0.6
1,122,200 - -0.1
1,122,213 + -0.7
1,122,330 + -0.0
1,122,342 - -0.9
1,122,351 + -0.5
1,123,071 - +2.4
1,123,079 - +2.2
1,123,088 - +0.7

Or see this region's nucleotide sequence