Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5908

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14275 and 14276 are separated by 180 nucleotides14276 and 14277 are separated by 386 nucleotides mRNA_5907: 14275 - K02726 PSMA2 20S proteasome subunit alpha 2, at 1,217,461 to 1,218,756 14275 mRNA_5908: 14276 - Hypothetical Protein, at 1,218,937 to 1,220,289 14276 mRNA_5909: 14277 - K00077 panE, apbA 2-dehydropantoate 2-reductase, at 1,220,676 to 1,222,238 14277

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,218,912 - -0.3
1,219,000 + +2.2
1,219,074 + 14276 mRNA_5908 0.10 +2.4
1,219,082 + 14276 mRNA_5908 0.11 -0.3
1,219,094 - 14276 mRNA_5908 0.12 +0.1
1,219,112 - 14276 mRNA_5908 0.13 +1.3
1,219,124 + 14276 mRNA_5908 0.14 +0.1
1,219,126 - 14276 mRNA_5908 0.14 -2.0
1,219,129 - 14276 mRNA_5908 0.14 -0.8
1,219,132 + 14276 mRNA_5908 0.14 -0.1
1,219,143 - 14276 mRNA_5908 0.15 +1.5
1,219,151 - 14276 mRNA_5908 0.16 +2.4
1,219,172 - 14276 mRNA_5908 0.17 +3.0
1,219,174 - 14276 mRNA_5908 0.18 -0.9
1,219,195 - 14276 mRNA_5908 0.19 -1.7
1,219,203 - 14276 mRNA_5908 0.20 +1.8
1,219,210 + 14276 mRNA_5908 0.20 +0.1
1,219,235 - 14276 mRNA_5908 0.22 +0.7
1,219,297 + 14276 mRNA_5908 0.27 -0.0
1,219,327 - 14276 mRNA_5908 0.29 +0.9
1,219,346 + 14276 mRNA_5908 0.30 +0.3
1,219,363 - 14276 mRNA_5908 0.31 -0.1
1,219,380 - 14276 mRNA_5908 0.33 -0.8
1,219,396 + 14276 mRNA_5908 0.34 +0.3
1,219,407 + 14276 mRNA_5908 0.35 -0.5
1,219,420 + 14276 mRNA_5908 0.36 +0.2
1,219,425 - 14276 mRNA_5908 0.36 +0.2
1,219,485 + 14276 mRNA_5908 0.41 +1.2
1,219,493 + 14276 mRNA_5908 0.41 -0.3
1,219,502 + 14276 mRNA_5908 0.42 +0.2
1,219,502 - 14276 mRNA_5908 0.42 -0.2
1,219,536 - 14276 mRNA_5908 0.44 +0.9
1,219,565 - 14276 mRNA_5908 0.46 -0.0
1,219,596 + 14276 mRNA_5908 0.49 -0.3
1,219,652 - 14276 mRNA_5908 0.53 -2.3
1,219,670 + 14276 mRNA_5908 0.54 -0.3
1,219,682 - 14276 mRNA_5908 0.55 +0.5
1,219,691 - 14276 mRNA_5908 0.56 -0.2
1,219,697 + 14276 mRNA_5908 0.56 -2.3
1,219,711 + 14276 mRNA_5908 0.57 +0.7
1,219,716 - 14276 mRNA_5908 0.58 -0.6
1,219,716 + 14276 mRNA_5908 0.58 -1.3
1,219,717 + 14276 mRNA_5908 0.58 +0.3
1,219,719 + 14276 mRNA_5908 0.58 +0.4
1,219,719 + 14276 mRNA_5908 0.58 -0.5
1,219,731 - 14276 mRNA_5908 0.59 +0.8
1,219,732 + 14276 mRNA_5908 0.59 +1.6
1,219,740 + 14276 mRNA_5908 0.59 +0.7
1,219,749 + 14276 mRNA_5908 0.60 -0.3
1,219,762 + 14276 mRNA_5908 0.61 -0.5
1,219,765 - 14276 mRNA_5908 0.61 -1.5
1,219,782 - 14276 mRNA_5908 0.62 -1.4
1,219,785 - 14276 mRNA_5908 0.63 -0.2
1,219,833 - 14276 mRNA_5908 0.66 -0.6
1,219,835 + 14276 mRNA_5908 0.66 -0.5
1,219,839 + 14276 mRNA_5908 0.67 +0.2
1,219,853 - 14276 mRNA_5908 0.68 -2.4
1,219,894 + 14276 mRNA_5908 0.71 +0.1
1,219,922 + 14276 mRNA_5908 0.73 +0.0
1,219,963 + 14276 mRNA_5908 0.76 -0.5
1,219,977 - 14276 mRNA_5908 0.77 -1.4
1,219,990 + 14276 mRNA_5908 0.78 +0.2
1,220,019 + 14276 mRNA_5908 0.80 +0.4
1,220,021 + 14276 mRNA_5908 0.80 -0.1
1,220,048 - 14276 mRNA_5908 0.82 +0.1
1,220,049 + 14276 mRNA_5908 0.82 -0.3
1,220,063 + 14276 mRNA_5908 0.83 +0.8
1,220,077 + 14276 mRNA_5908 0.84 +0.3
1,220,095 - 14276 mRNA_5908 0.86 +0.1
1,220,106 + 14276 mRNA_5908 0.86 +0.2
1,220,121 - 14276 mRNA_5908 0.88 +1.8
1,220,152 + 14276 mRNA_5908 0.90 -0.1
1,220,158 + -0.4
1,220,162 + -0.2
1,220,167 - +0.8
1,220,179 + +0.5
1,220,200 + +0.7
1,220,229 - -0.0
1,220,468 + +0.3
1,220,523 + -0.4

Or see this region's nucleotide sequence