Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5937

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14304 and 14305 are separated by 395 nucleotides14305 and 14306 are separated by 974 nucleotides mRNA_5936: 14304 - HMMPfam-Homeobox domain-PF00046,HMMPfam-Predicted membrane protein (DUF2231)-PF09990,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689, at 1,272,303 to 1,276,279 14304 mRNA_5937: 14305 - Hypothetical Protein, at 1,276,675 to 1,277,757 14305 mRNA_5938: 14306 - Hypothetical Protein, at 1,278,732 to 1,279,189 14306

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,276,027 - +0.3
1,276,176 + -0.8
1,276,322 - +0.2
1,276,438 - -0.4
1,276,438 + +1.0
1,276,443 - +1.3
1,276,468 - -0.7
1,276,842 + 14305 mRNA_5937 0.15 +1.1
1,277,113 + 14305 mRNA_5937 0.40 +0.4
1,277,236 - 14305 mRNA_5937 0.52 +1.2
1,277,381 - 14305 mRNA_5937 0.65 -0.0
1,277,382 + 14305 mRNA_5937 0.65 +0.0
1,277,386 - 14305 mRNA_5937 0.66 -0.1
1,277,667 + +2.4
1,277,726 + -1.3
1,277,998 + -1.2
1,278,070 + -1.9
1,278,073 - +1.4
1,278,074 + +0.2
1,278,102 - +0.7
1,278,114 - -0.6
1,278,143 + -0.0
1,278,254 - +0.2
1,278,430 - -0.9
1,278,434 - -0.1
1,278,487 + +1.2
1,278,537 - +0.8
1,278,553 + +0.6
1,278,554 + -0.4
1,278,612 + +0.6
1,278,665 + +0.4
1,278,692 - +0.3
1,278,718 + -0.1
1,278,724 + +0.9

Or see this region's nucleotide sequence