Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5978

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14345 and 14346 are separated by 724 nucleotides14346 and 14347 are separated by 241 nucleotides14347 and 14348 are separated by 285 nucleotides mRNA_5977: 14345 - HMMPfam-F-box-like-PF12937, at 1,365,252 to 1,367,121 14345 mRNA_5978: 14346 - Hypothetical Protein, at 1,367,846 to 1,369,331 14346 mRNA_5979: 14347 - K12832 SF3B5, SF3B10 splicing factor 3B subunit 5, at 1,369,573 to 1,370,035 14347 mRNA_5980: 14348 - K12592 C1D, LRP1 exosome complex protein LRP1, at 1,370,321 to 1,371,409 14348

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,366,892 - 14345 mRNA_5977 0.88 +1.2
1,366,896 - 14345 mRNA_5977 0.88 +1.4
1,367,055 - -0.1
1,367,262 + -0.3
1,367,345 - -2.5
1,367,347 - +1.2
1,367,348 - -0.3
1,367,356 + +2.6
1,367,358 - +1.3
1,367,374 + +0.4
1,367,374 + -0.2
1,367,374 + -2.6
1,367,374 - -3.2
1,367,448 + -2.1
1,368,093 + 14346 mRNA_5978 0.17 -0.4
1,368,254 + 14346 mRNA_5978 0.27 +0.7
1,370,230 - -0.3

Or see this region's nucleotide sequence