Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6017

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14384 and 14385 are separated by 435 nucleotides14385 and 14386 are separated by 44 nucleotides14386 and 14387 are separated by 135 nucleotides mRNA_6016: 14384 - Hypothetical Protein, at 1,460,179 to 1,461,527 14384 mRNA_6017: 14385 - Hypothetical Protein, at 1,461,963 to 1,463,286 14385 mRNA_6018: 14386 - Hypothetical Protein, at 1,463,331 to 1,463,528 14386 mRNA_6019: 14387 - Hypothetical Protein, at 1,463,664 to 1,464,236 14387

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,461,219 + 14384 mRNA_6016 0.77 +0.2
1,461,244 + 14384 mRNA_6016 0.79 +0.3
1,461,448 - -2.3
1,461,457 + -1.0
1,461,691 + -0.5
1,461,730 + +0.8
1,461,877 - -1.6
1,462,150 + 14385 mRNA_6017 0.14 +1.0
1,462,153 - 14385 mRNA_6017 0.14 -0.1
1,462,153 - 14385 mRNA_6017 0.14 -0.2
1,463,099 + 14385 mRNA_6017 0.86 -0.4
1,463,159 + -0.5
1,463,225 + -0.7
1,463,500 - 14386 mRNA_6018 0.85 +0.3
1,463,691 - -0.2
1,463,692 + +1.5
1,463,908 + 14387 mRNA_6019 0.43 -0.2
1,463,941 - 14387 mRNA_6019 0.48 +1.6
1,463,946 - 14387 mRNA_6019 0.49 -1.5
1,463,947 - 14387 mRNA_6019 0.49 +2.0
1,463,956 + 14387 mRNA_6019 0.51 -0.4
1,464,009 + 14387 mRNA_6019 0.60 -1.7
1,464,269 + -1.4

Or see this region's nucleotide sequence