Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6021

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14388 and 14389 are separated by 325 nucleotides14389 and 14390 are separated by 499 nucleotides mRNA_6020: 14388 - SUPERFAMILY--SSF52047, at 1,464,544 to 1,465,976 14388 mRNA_6021: 14389 - Hypothetical Protein, at 1,466,302 to 1,468,008 14389 mRNA_6022: 14390 - SUPERFAMILY--SSF52047, at 1,468,508 to 1,469,944 14390

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,466,149 - +1.8
1,466,292 - +0.8
1,466,336 + -2.9
1,466,475 + 14389 mRNA_6021 0.10 -0.8
1,466,497 + 14389 mRNA_6021 0.11 +0.3
1,466,628 + 14389 mRNA_6021 0.19 +1.5
1,466,762 - 14389 mRNA_6021 0.27 -0.2
1,466,790 + 14389 mRNA_6021 0.29 +0.5
1,466,932 + 14389 mRNA_6021 0.37 -1.2
1,467,058 - 14389 mRNA_6021 0.44 -0.1
1,467,067 - 14389 mRNA_6021 0.45 -0.1
1,467,069 - 14389 mRNA_6021 0.45 +0.8
1,467,074 + 14389 mRNA_6021 0.45 +0.1
1,467,076 - 14389 mRNA_6021 0.45 +0.8
1,467,077 + 14389 mRNA_6021 0.45 -1.6
1,467,086 + 14389 mRNA_6021 0.46 -0.1
1,467,087 - 14389 mRNA_6021 0.46 -1.0
1,467,103 - 14389 mRNA_6021 0.47 +0.9
1,467,104 - 14389 mRNA_6021 0.47 -0.2
1,467,124 - 14389 mRNA_6021 0.48 +0.8
1,467,132 - 14389 mRNA_6021 0.49 -0.9
1,467,163 + 14389 mRNA_6021 0.50 -0.4
1,467,166 - 14389 mRNA_6021 0.51 -1.8
1,467,173 + 14389 mRNA_6021 0.51 +1.4
1,467,184 - 14389 mRNA_6021 0.52 -0.6
1,467,191 + 14389 mRNA_6021 0.52 -1.1
1,467,296 - 14389 mRNA_6021 0.58 -0.1
1,467,308 - 14389 mRNA_6021 0.59 +3.0
1,467,308 - 14389 mRNA_6021 0.59 +0.5
1,467,340 + 14389 mRNA_6021 0.61 -2.0
1,467,369 - 14389 mRNA_6021 0.63 -1.1
1,467,502 + 14389 mRNA_6021 0.70 -1.6
1,467,508 + 14389 mRNA_6021 0.71 -0.5
1,467,518 - 14389 mRNA_6021 0.71 -0.6
1,467,526 + 14389 mRNA_6021 0.72 +1.0
1,467,528 + 14389 mRNA_6021 0.72 +3.1
1,467,530 + 14389 mRNA_6021 0.72 -0.8
1,467,581 - 14389 mRNA_6021 0.75 -1.5
1,467,582 + 14389 mRNA_6021 0.75 -1.0
1,467,587 + 14389 mRNA_6021 0.75 +0.8
1,467,591 + 14389 mRNA_6021 0.76 -0.1
1,467,599 + 14389 mRNA_6021 0.76 +0.3
1,467,600 + 14389 mRNA_6021 0.76 -2.0
1,467,605 + 14389 mRNA_6021 0.76 -0.1
1,467,606 + 14389 mRNA_6021 0.76 -0.0
1,467,608 - 14389 mRNA_6021 0.77 -0.1
1,467,612 + 14389 mRNA_6021 0.77 +0.2
1,467,624 + 14389 mRNA_6021 0.77 +1.9
1,467,630 - 14389 mRNA_6021 0.78 -0.0
1,467,636 + 14389 mRNA_6021 0.78 +0.0
1,467,668 + 14389 mRNA_6021 0.80 -1.6
1,467,680 + 14389 mRNA_6021 0.81 +0.3
1,467,732 + 14389 mRNA_6021 0.84 -0.8
1,467,737 + 14389 mRNA_6021 0.84 -1.2
1,467,759 + 14389 mRNA_6021 0.85 -0.4
1,467,945 + -0.8
1,467,948 - -1.6
1,467,949 + +2.2
1,468,023 - -0.1
1,468,378 - -0.5
1,468,492 - +1.3
1,468,691 + 14390 mRNA_6022 0.13 +2.2
1,468,815 - 14390 mRNA_6022 0.21 -1.4
1,468,823 - 14390 mRNA_6022 0.22 -1.2
1,468,829 - 14390 mRNA_6022 0.22 -1.7
1,468,854 - 14390 mRNA_6022 0.24 -1.0

Or see this region's nucleotide sequence