Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6065

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14433 and 14434 are separated by 395 nucleotides mRNA_6065: 14433 - KOG1082 Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing, at 1,560,376 to 1,561,281 14433 mRNA_6066: 14434 - K20363 YIP1, YIPF5 protein transport protein YIP1, at 1,561,677 to 1,562,701 14434

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,559,486 - +0.4
1,559,509 - +2.2
1,559,555 - +0.0
1,559,784 - -0.3
1,559,851 - +0.7
1,559,905 - +0.8
1,559,926 - -0.5
1,559,958 + -0.7
1,559,961 + -0.6
1,560,021 + -0.5
1,560,062 - +2.6
1,560,068 + +0.6
1,560,091 - +1.3
1,560,223 + -0.3
1,560,341 + +1.9
1,560,392 + +0.1
1,560,427 + +1.4
1,560,556 - 14433 mRNA_6065 0.20 -0.2
1,560,660 + 14433 mRNA_6065 0.31 -1.8
1,560,673 - 14433 mRNA_6065 0.33 -0.3
1,560,674 + 14433 mRNA_6065 0.33 -0.9
1,560,967 - 14433 mRNA_6065 0.65 -1.5
1,560,978 + 14433 mRNA_6065 0.66 +0.2
1,561,001 + 14433 mRNA_6065 0.69 -0.6
1,561,004 - 14433 mRNA_6065 0.69 -0.5
1,561,010 + 14433 mRNA_6065 0.70 -1.1
1,561,011 + 14433 mRNA_6065 0.70 +0.9
1,561,084 - 14433 mRNA_6065 0.78 +1.7
1,561,189 + 14433 mRNA_6065 0.90 +0.0
1,561,274 - +0.1
1,561,340 - +0.5
1,561,538 - +1.3
1,561,548 + +2.6
1,561,556 - -0.9

Or see this region's nucleotide sequence