Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6078

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14445 and 14446 are separated by 238 nucleotides14446 and 14447 are separated by 113 nucleotides mRNA_6077: 14445 - KOG3869 Uncharacterized conserved protein, at 1,590,853 to 1,592,368 14445 mRNA_6078: 14446 - HMMPfam-Essential protein Yae1, N terminal-PF09811, at 1,592,607 to 1,593,994 14446 mRNA_6079: 14447 - K12776 MEK1 meiosis-specific serine/threonine-protein kinase MEK1, at 1,594,108 to 1,596,398 14447

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,592,327 - -0.2
1,592,363 + -1.2
1,592,409 + -0.6
1,592,412 + -0.2
1,592,450 - +0.4
1,592,455 - +2.0
1,592,829 - 14446 mRNA_6078 0.16 -0.7
1,592,832 - 14446 mRNA_6078 0.16 -0.2
1,592,950 + 14446 mRNA_6078 0.25 +1.2
1,592,974 + 14446 mRNA_6078 0.26 +1.4
1,592,992 + 14446 mRNA_6078 0.28 -0.2
1,593,044 + 14446 mRNA_6078 0.31 -0.7
1,594,101 - -0.9
1,594,334 - -1.8
1,594,381 + 14447 mRNA_6079 0.12 -0.0
1,594,385 - 14447 mRNA_6079 0.12 -0.7
1,594,442 + 14447 mRNA_6079 0.15 +1.2
1,594,444 + 14447 mRNA_6079 0.15 +0.6
1,594,489 - 14447 mRNA_6079 0.17 +1.8
1,594,505 - 14447 mRNA_6079 0.17 -0.7
1,594,506 + 14447 mRNA_6079 0.17 +0.9
1,594,626 - 14447 mRNA_6079 0.23 -1.3
1,594,708 + 14447 mRNA_6079 0.26 -0.2
1,594,710 - 14447 mRNA_6079 0.26 -1.1
1,594,803 - 14447 mRNA_6079 0.30 +3.4
1,594,829 + 14447 mRNA_6079 0.31 -0.4
1,594,924 + 14447 mRNA_6079 0.36 +1.3

Or see this region's nucleotide sequence