Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6095

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14462 and 14463 are separated by 793 nucleotides14463 and 14464 are separated by 918 nucleotides mRNA_6094: 14462 - K16738 NDE1, NUDE nuclear distribution protein NudE, at 1,634,041 to 1,636,155 14462 mRNA_6095: 14463 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 1,636,949 to 1,643,604 14463 mRNA_6096: 14464 - K05721 FGD2 FYVE, RhoGEF and PH domain containing 2, at 1,644,523 to 1,649,566 14464

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,636,847 - -0.7
1,636,857 - +0.2
1,636,861 - -1.8
1,636,861 - +1.1
1,636,864 - -0.3
1,636,870 + +0.3
1,636,877 + +0.6
1,636,881 + +0.2
1,636,888 + +2.0
1,636,889 + -1.0
1,636,913 + +1.6
1,636,954 - -0.5
1,637,000 - +0.6
1,637,019 + +0.6
1,637,019 + +0.3
1,637,028 + +0.4
1,637,036 + +0.9
1,637,170 + +0.9
1,637,171 - +0.2
1,637,311 - -0.2
1,637,320 + +1.8
1,637,338 + +0.7
1,637,639 + 14463 mRNA_6095 0.10 -0.5
1,637,751 - 14463 mRNA_6095 0.12 +0.2
1,637,925 + 14463 mRNA_6095 0.15 +1.4
1,638,009 - 14463 mRNA_6095 0.16 +0.2
1,638,174 - 14463 mRNA_6095 0.18 +0.2
1,638,345 - 14463 mRNA_6095 0.21 -0.5
1,638,349 - 14463 mRNA_6095 0.21 +0.6
1,638,473 - 14463 mRNA_6095 0.23 -0.1
1,638,488 + 14463 mRNA_6095 0.23 +2.2
1,638,541 + 14463 mRNA_6095 0.24 +0.3
1,638,643 - 14463 mRNA_6095 0.25 +0.4
1,638,918 + 14463 mRNA_6095 0.30 +0.0
1,639,064 + 14463 mRNA_6095 0.32 -0.2
1,639,474 + 14463 mRNA_6095 0.38 +0.4
1,639,513 - 14463 mRNA_6095 0.39 +1.9
1,640,001 + 14463 mRNA_6095 0.46 +1.4
1,640,085 + 14463 mRNA_6095 0.47 -0.5
1,640,800 + 14463 mRNA_6095 0.58 +1.5
1,640,830 + 14463 mRNA_6095 0.58 -0.8
1,640,950 + 14463 mRNA_6095 0.60 +0.2
1,640,955 - 14463 mRNA_6095 0.60 -0.4
1,641,192 + 14463 mRNA_6095 0.64 +2.7
1,641,238 - 14463 mRNA_6095 0.64 +2.1
1,641,822 - 14463 mRNA_6095 0.73 +0.3
1,641,833 - 14463 mRNA_6095 0.73 +0.4
1,641,837 - 14463 mRNA_6095 0.73 +0.4
1,641,986 - 14463 mRNA_6095 0.76 +1.1
1,642,021 - 14463 mRNA_6095 0.76 -0.2
1,642,163 + 14463 mRNA_6095 0.78 +0.3
1,642,270 - 14463 mRNA_6095 0.80 +0.5
1,642,285 + 14463 mRNA_6095 0.80 +1.5
1,642,474 + 14463 mRNA_6095 0.83 +3.3
1,642,564 - 14463 mRNA_6095 0.84 +3.2
1,642,678 - 14463 mRNA_6095 0.86 +1.4
1,642,728 + 14463 mRNA_6095 0.87 +0.2
1,642,836 - 14463 mRNA_6095 0.88 +1.1
1,642,836 - 14463 mRNA_6095 0.88 +0.5
1,642,842 + 14463 mRNA_6095 0.89 +0.2
1,642,925 + 14463 mRNA_6095 0.90 +1.8
1,642,987 - -0.1
1,643,174 + +1.3
1,643,316 - +0.2
1,643,333 + +0.9
1,643,840 - -0.8
1,643,898 + +2.7
1,644,079 - +0.5
1,644,079 + +0.0
1,644,310 - +0.7
1,644,314 + +1.4
1,644,334 + +0.3
1,644,468 + -0.4
1,644,485 + +1.3

Or see this region's nucleotide sequence