Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6100

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14467 and 14468 are separated by 917 nucleotides mRNA_6099: 14467 - KOG3091 Nuclear pore complex, p54 component (sc Nup57), at 1,652,457 to 1,654,232 14467 mRNA_6100: 14468 - Hypothetical Protein, at 1,655,150 to 1,656,189 14468

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,654,394 - -2.1
1,654,396 - -0.4
1,654,542 + +0.0
1,654,579 - +0.7
1,654,684 - -1.3
1,654,692 - -0.1
1,654,696 + +0.4
1,654,821 - +0.1
1,654,828 + -0.3
1,654,828 + +2.3
1,654,831 - -0.5
1,654,831 - -0.5
1,654,994 - +0.6
1,655,108 + -0.1
1,655,124 - +0.2
1,655,135 + -1.2
1,655,297 + 14468 mRNA_6100 0.14 -2.5
1,655,384 - 14468 mRNA_6100 0.23 +0.6
1,655,391 - 14468 mRNA_6100 0.23 -0.1
1,655,405 - 14468 mRNA_6100 0.25 +0.6
1,655,469 - 14468 mRNA_6100 0.31 +2.7
1,655,632 + 14468 mRNA_6100 0.46 +0.7
1,655,653 + 14468 mRNA_6100 0.48 +0.7
1,655,946 - 14468 mRNA_6100 0.77 +2.5
1,656,218 + +0.5
1,656,241 + +0.6
1,656,270 + -0.9
1,656,273 + +0.7
1,656,326 - -0.6
1,656,332 - -0.4
1,656,374 + +0.0
1,656,398 + +0.5
1,656,407 + +0.5
1,656,415 - -1.4
1,656,577 + +0.1
1,656,593 + +3.1
1,656,681 - -0.6
1,656,705 - -0.6
1,656,862 + -0.7
1,656,865 - -0.0
1,656,865 + -1.5
1,656,865 - +0.4
1,656,865 - +0.8
1,656,867 - -0.2
1,656,880 + +1.0
1,656,884 + +1.0
1,657,025 - +0.4
1,657,151 - +1.1
1,657,155 - -1.0
1,657,162 + -0.6
1,657,179 + -2.2
1,657,186 + +1.6

Or see this region's nucleotide sequence