Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6104

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14471 and 14472 are separated by 363 nucleotides14472 and 14473 are separated by 137 nucleotides mRNA_6103: 14471 - K08762 DBI, ACBP diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein), at 1,663,795 to 1,664,238 14471 mRNA_6104: 14472 - Hypothetical Protein, at 1,664,602 to 1,665,579 14472 mRNA_6105: 14473 - Hypothetical Protein, at 1,665,717 to 1,666,372 14473

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,663,602 + +2.1
1,663,645 + +0.3
1,663,723 + +0.2
1,663,737 - +0.1
1,663,738 + -0.0
1,663,739 + +1.7
1,663,913 - 14471 mRNA_6103 0.27 +0.2
1,663,916 + 14471 mRNA_6103 0.27 -2.1
1,664,029 - 14471 mRNA_6103 0.53 +0.2
1,664,468 - +2.3
1,664,887 - 14472 mRNA_6104 0.29 -0.9
1,664,928 - 14472 mRNA_6104 0.33 -0.1
1,665,276 - 14472 mRNA_6104 0.69 +0.3
1,665,444 - 14472 mRNA_6104 0.86 -0.9
1,665,457 - 14472 mRNA_6104 0.87 -0.6
1,665,469 - 14472 mRNA_6104 0.89 +0.3
1,665,474 - 14472 mRNA_6104 0.89 -0.2
1,665,545 + -4.1
1,665,610 + +0.4
1,665,681 - -2.1
1,665,749 - -0.8
1,665,751 + +0.1
1,665,757 + -1.8
1,665,777 + +0.8
1,665,789 - 14473 mRNA_6105 0.11 -0.4
1,665,834 - 14473 mRNA_6105 0.18 -1.6
1,665,847 + 14473 mRNA_6105 0.20 +1.6
1,665,892 + 14473 mRNA_6105 0.27 +0.5
1,665,895 + 14473 mRNA_6105 0.27 -1.8
1,665,900 + 14473 mRNA_6105 0.28 -0.3
1,665,900 + 14473 mRNA_6105 0.28 +0.4
1,665,903 - 14473 mRNA_6105 0.28 -0.3
1,665,914 - 14473 mRNA_6105 0.30 +0.6
1,665,915 - 14473 mRNA_6105 0.30 +2.8
1,665,920 + 14473 mRNA_6105 0.31 -0.4
1,665,922 + 14473 mRNA_6105 0.31 +0.4
1,665,941 - 14473 mRNA_6105 0.34 -1.2
1,665,948 + 14473 mRNA_6105 0.35 -0.7
1,666,004 - 14473 mRNA_6105 0.44 +0.7
1,666,031 + 14473 mRNA_6105 0.48 +0.0
1,666,069 + 14473 mRNA_6105 0.54 -1.8
1,666,069 - 14473 mRNA_6105 0.54 -0.3
1,666,072 + 14473 mRNA_6105 0.54 -0.5
1,666,079 - 14473 mRNA_6105 0.55 -2.3
1,666,088 + 14473 mRNA_6105 0.57 +0.4
1,666,092 + 14473 mRNA_6105 0.57 +0.3
1,666,099 + 14473 mRNA_6105 0.58 -1.2
1,666,109 + 14473 mRNA_6105 0.60 -0.1
1,666,118 - 14473 mRNA_6105 0.61 +2.8
1,666,211 + 14473 mRNA_6105 0.75 -2.4
1,666,212 + 14473 mRNA_6105 0.75 +0.4
1,666,214 - 14473 mRNA_6105 0.76 -1.8
1,666,214 - 14473 mRNA_6105 0.76 -0.7
1,666,214 - 14473 mRNA_6105 0.76 +1.2
1,666,221 + 14473 mRNA_6105 0.77 +0.2
1,666,229 - 14473 mRNA_6105 0.78 +0.2
1,666,230 - 14473 mRNA_6105 0.78 -1.0
1,666,236 - 14473 mRNA_6105 0.79 +0.6
1,666,237 - 14473 mRNA_6105 0.79 -0.7
1,666,254 + 14473 mRNA_6105 0.82 -1.3
1,666,271 - 14473 mRNA_6105 0.84 +0.3
1,666,286 + 14473 mRNA_6105 0.87 +0.9
1,666,319 - -0.1
1,666,350 - +1.2
1,666,362 - +0.8
1,666,370 + +1.6
1,666,378 - -0.8
1,666,387 - +3.6
1,666,387 + +0.6
1,666,390 - -0.8
1,666,394 + +0.9
1,666,407 - -0.3
1,666,408 - +1.3
1,666,415 - +0.4
1,666,422 + -0.1
1,666,474 - +0.1
1,666,479 - -1.0
1,666,491 + +0.1
1,666,493 - -0.0
1,666,493 - +0.7
1,666,496 - +0.3
1,666,499 - -1.2
1,666,506 + -0.9
1,666,507 + +1.5
1,666,515 - -1.6
1,666,521 + -1.3
1,666,533 + -0.8
1,666,538 + +1.0
1,666,540 - -1.5
1,666,549 - +1.8
1,666,549 - +0.9
1,666,552 - -2.1
1,666,557 + +1.3
1,666,561 - +2.3
1,666,561 - -2.1
1,666,562 - -1.6
1,666,571 + -0.1
1,666,575 - -0.4
1,666,576 + -0.6

Or see this region's nucleotide sequence