Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6127

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14495 and 14496 are separated by 215 nucleotides mRNA_6127: 14495 - KOG0772 Uncharacterized conserved protein, contains WD40 repeat, at 68,190 to 70,680 14495 mRNA_6128: 14496 - BLAST DEHA2B11858p [Debaryomyces hansenii CBS767], at 70,896 to 71,507 14496

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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67,253 - +0.4
67,255 - -0.0
67,257 - -0.1
67,262 - +0.9
67,267 + +0.8
67,271 + +0.5
67,303 - +0.8
67,318 - -0.7
67,321 + -0.4
67,350 - -0.8
67,390 + +0.2
67,412 + +0.5
67,416 + -0.0
67,423 - -0.2
67,424 - -0.6
67,424 - -0.6
67,426 + +1.7
67,427 - +2.2
67,444 + +0.1
67,447 - +2.2
67,500 + +0.4
67,502 - +0.6
67,510 + -2.5
67,516 - +1.1
67,520 - +0.1
67,974 + +0.9
68,089 + -0.7
68,096 + -1.9
68,107 - -0.1
68,124 + -1.3
70,720 - -0.5
70,828 + +0.3
70,837 - -1.0
70,846 - +0.4
70,999 + 14496 mRNA_6128 0.17 -0.5
71,031 + 14496 mRNA_6128 0.22 -0.3
71,151 + 14496 mRNA_6128 0.42 +0.6
71,296 + 14496 mRNA_6128 0.65 +0.9
71,420 - 14496 mRNA_6128 0.86 -0.2
71,440 + 14496 mRNA_6128 0.89 +0.4
71,443 - 14496 mRNA_6128 0.89 -2.7
71,451 + -1.2
71,470 + +0.6
71,560 + -0.6

Or see this region's nucleotide sequence