Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6146

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14513 and 14514 are separated by 482 nucleotides mRNA_6145: 14513 - HMMPfam-Protein of unknown function (DUF2456)-PF10445, at 115,513 to 116,915 14513 mRNA_6146: 14514 - K02925 RP-L3e, RPL3 large subunit ribosomal protein L3e, at 117,398 to 118,882 14514

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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116,426 + 14513 mRNA_6145 0.65 +0.7
116,535 - 14513 mRNA_6145 0.73 -2.2
116,656 + 14513 mRNA_6145 0.81 +0.5
116,664 - 14513 mRNA_6145 0.82 -0.1
116,699 - 14513 mRNA_6145 0.85 -3.2
116,716 - 14513 mRNA_6145 0.86 +0.9
116,716 + 14513 mRNA_6145 0.86 -1.0
116,755 - 14513 mRNA_6145 0.89 +1.5
116,850 + +0.2
116,865 - +0.0
116,951 + +1.8
117,005 - -1.2
117,017 + +0.8
117,025 - -0.6
117,029 - +0.2
117,036 + -0.3
117,036 + +0.7
117,036 + -0.2
117,036 + +2.0
117,039 + -0.4
117,048 + +0.7
117,132 + +0.2
117,170 - -0.6
117,215 + -0.7
119,273 + +0.4
119,279 + -1.6
119,283 + -1.5
119,425 + +0.1
119,440 - -0.3
119,441 - -0.9
119,448 - -0.5
119,449 - -1.1
119,456 - +0.6
119,462 - +1.4
119,464 + -0.5
119,625 - -0.5

Or see this region's nucleotide sequence