Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6151

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14518 and 14519 are separated by 196 nucleotides14519 and 14520 are separated by 347 nucleotides mRNA_6150: 14518 - KOG3399 Predicted Yippee-type zinc-binding protein, at 123,821 to 124,477 14518 mRNA_6151: 14519 - Hypothetical Protein, at 124,674 to 126,819 14519 mRNA_6152: 14520 - HMMPfam-Slx4 endonuclease-PF09494, at 127,167 to 130,520 14520

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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123,676 + -1.0
123,731 + -0.2
123,850 + -0.7
124,038 + 14518 mRNA_6150 0.33 +0.1
124,102 + 14518 mRNA_6150 0.43 +1.0
124,299 + 14518 mRNA_6150 0.73 +1.9
124,382 - 14518 mRNA_6150 0.85 -1.0
124,392 - 14518 mRNA_6150 0.87 +2.7
124,531 - +0.4
124,573 + -0.7
124,676 - -0.5
124,700 + -0.1
124,707 - +1.4
125,151 - 14519 mRNA_6151 0.22 +2.1
125,318 + 14519 mRNA_6151 0.30 +0.3
125,886 + 14519 mRNA_6151 0.56 -0.4
125,910 + 14519 mRNA_6151 0.58 +0.4
126,269 - 14519 mRNA_6151 0.74 -1.6
126,332 + 14519 mRNA_6151 0.77 -0.3
126,435 - 14519 mRNA_6151 0.82 -0.7
126,460 + 14519 mRNA_6151 0.83 -1.1
126,465 - 14519 mRNA_6151 0.83 -0.6
126,597 - 14519 mRNA_6151 0.90 -1.4
126,733 - -0.1
126,734 - -0.0
126,744 - -0.7
126,750 + -0.9
126,757 - +0.1
126,868 + +0.1
126,879 + +0.2
127,015 - +0.7
127,040 + +0.8
127,191 + -1.0
127,202 - +0.4

Or see this region's nucleotide sequence