Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6226

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14594 and 14595 are separated by 966 nucleotides mRNA_6226: 14594 - Hypothetical Protein, at 297,535 to 298,697 14594 mRNA_6227: 14595 - BLAST DEAD box helicase [Trichophyton violaceum], at 299,664 to 299,897 14595

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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296,569 + -0.4
296,579 + -0.2
296,587 - +1.5
296,595 - -0.7
296,604 - -0.3
296,604 + +1.7
296,617 + +0.6
296,624 - +1.2
296,713 + -0.9
296,738 - +0.7
296,752 - -0.8
297,301 + -0.8
297,345 + -0.9
297,739 + 14594 mRNA_6226 0.18 +0.4
297,750 + 14594 mRNA_6226 0.18 +0.6
297,778 + 14594 mRNA_6226 0.21 -0.2
297,778 - 14594 mRNA_6226 0.21 +1.4
298,489 + 14594 mRNA_6226 0.82 +0.3
298,626 - +0.2
298,640 - +0.5
298,664 + -1.2
298,755 + -0.9
298,756 - +1.0
298,757 + -3.3
298,764 + -0.3
298,953 + -2.1
299,024 + +1.1
299,095 - -2.4
299,099 - +0.1
299,105 + -0.2
299,105 - -1.5
299,106 + -0.0
299,147 - +1.8
299,151 + -0.5
299,159 - -0.1
299,160 + -0.7
299,205 + +0.4
299,207 - -0.8
299,230 + +0.9

Or see this region's nucleotide sequence