Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6229

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14596 and 14597 are separated by 244 nucleotides14597 and 14598 are separated by 830 nucleotides mRNA_6228: 14596 - Hypothetical Protein, at 301,912 to 302,184 14596 mRNA_6229: 14597 - K01895 ACSS, acs acetyl-CoA synthetase, at 302,429 to 305,318 14597 mRNA_6230: 14598 - K10688 UBE2W, UBC16 ubiquitin-conjugating enzyme E2 W, at 306,149 to 307,289 14598

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
301,597 + +1.6
302,242 - -0.5
302,663 - +1.4
302,933 + 14597 mRNA_6229 0.17 -0.8
303,041 + 14597 mRNA_6229 0.21 -1.9
303,055 + 14597 mRNA_6229 0.22 -1.6
303,202 - 14597 mRNA_6229 0.27 -0.6
303,338 + 14597 mRNA_6229 0.31 -0.8
304,473 - 14597 mRNA_6229 0.71 -3.0
304,488 + 14597 mRNA_6229 0.71 -1.0
304,506 - 14597 mRNA_6229 0.72 -1.8
304,515 + 14597 mRNA_6229 0.72 -1.2
304,517 + 14597 mRNA_6229 0.72 -0.3
304,522 + 14597 mRNA_6229 0.72 -1.3
304,786 - 14597 mRNA_6229 0.82 -1.3
304,792 - 14597 mRNA_6229 0.82 +0.7
304,793 + 14597 mRNA_6229 0.82 -2.1
304,810 - 14597 mRNA_6229 0.82 -1.0
304,817 - 14597 mRNA_6229 0.83 +1.9
305,102 - -0.6
305,104 - -2.1
305,107 - -0.1
305,252 + -1.5
305,256 + +0.9
305,261 - +0.5
305,392 - -0.2
305,396 - -0.2
305,396 + +0.2
305,400 - -0.2
305,400 - +0.2
305,415 + -0.1
305,417 - -0.6
305,421 - -0.4
305,424 - -1.1
305,431 - -0.6
305,434 - -3.5
305,435 - +0.8
305,435 - -1.0
305,438 + -0.2
305,439 - -0.4
305,440 - -1.8
305,443 + -2.2
305,444 + +1.7
305,453 - -1.3
305,453 + -0.2
305,454 - +0.7
305,454 + -0.5
305,454 - -1.7
305,455 + +1.2
305,455 - +0.6
305,467 - -0.1
305,468 + +0.7
305,472 - -1.1
305,473 - -0.6
305,474 + +0.0
305,474 + +0.6
305,474 + +0.1
305,476 - -0.4
305,488 + -0.0
305,491 + -0.4
305,491 - -0.2
305,502 - -0.2
305,528 - -0.6
305,531 - +0.2
305,531 + -1.0
305,531 - -0.8
305,536 + -0.1
305,536 - -3.2
305,545 + +1.7
305,548 + -1.2
305,554 - -0.3
305,558 - -0.0
305,568 + -0.3
305,578 + +0.5
305,588 + -0.6
305,600 - -1.4
305,603 + -0.1
305,609 - +0.1
305,615 + +0.2
305,628 - -0.7
305,630 - +0.6
305,638 + +0.7
305,703 + -1.6
305,738 - -0.6
305,748 + -0.9
305,765 - +0.9
305,786 - -0.0
305,863 - -1.0
305,880 + +0.7
305,883 - +1.1
305,891 + -0.0
305,902 - -1.7
305,906 - -0.0
305,907 - +1.4
305,909 + -0.3
305,916 - +0.3
305,917 + +1.6
305,924 - +0.2
305,924 - +1.3
305,934 + +1.3
305,985 - -0.1
305,997 - -0.4
306,016 - +0.1
306,049 + +1.2
306,053 + -0.3
306,151 + -0.2
306,152 + +0.1
306,177 - +0.6

Or see this region's nucleotide sequence