Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6244

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14611 and 14612 are separated by 692 nucleotides mRNA_6243: 14611 - Hypothetical Protein, at 337,932 to 340,072 14611 mRNA_6244: 14612 - K07901 RAB8A, MEL Ras-related protein Rab-8A, at 340,765 to 342,148 14612

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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339,846 + 14611 mRNA_6243 0.89 -2.1
339,858 + 14611 mRNA_6243 0.90 -0.5
339,861 - +0.2
339,992 + -0.7
339,998 + +0.5
340,150 + +1.6
340,297 - -0.1
340,298 + +0.5
340,307 + +0.2
340,308 - -1.9
340,421 - +0.0
340,453 - +2.0
340,557 - +3.8
340,566 - +2.3
340,573 + -0.2
340,584 + -1.4
340,588 + -0.3
340,588 - -1.0
340,691 + +0.8
340,693 - +0.1
340,741 - +1.0
342,148 - -2.5
342,180 + -1.5
342,264 + -0.1
342,309 - +0.2
342,428 + +0.4
342,453 + +0.4
342,463 + +0.7
342,469 + -1.0
342,470 - -0.3
342,607 - +2.3
342,609 - -0.9
342,621 + +0.8
342,659 - -1.8
342,760 - +0.3
342,778 + +2.1
342,797 + +0.2
342,828 - -0.2
342,886 + -0.0
342,922 + -0.1
342,941 + +0.1
342,963 - -2.7
342,971 + +1.4
342,988 - +3.4

Or see this region's nucleotide sequence