Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6325

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14692 and 14693 are separated by 579 nucleotides14693 and 14694 are separated by 248 nucleotides mRNA_6324: 14692 - Hypothetical Protein, at 549,404 to 551,693 14692 mRNA_6325: 14693 - Hypothetical Protein, at 552,273 to 554,258 14693 mRNA_6326: 14694 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 554,507 to 555,774 14694

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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551,505 - -0.6
551,681 - -0.7
551,780 - +0.4
551,787 - -0.4
551,787 - +0.1
551,792 + -0.8
551,808 - -1.1
551,823 - -0.9
551,827 - +1.7
551,832 - +0.1
551,837 + -1.3
551,838 - -1.5
551,841 - +3.2
551,842 + -1.2
551,846 + -0.3
551,997 + -1.1
552,126 + -0.3
552,132 + -0.4
552,438 - -0.5
552,875 - 14693 mRNA_6325 0.30 -0.2
553,039 + 14693 mRNA_6325 0.39 +1.4
553,163 - 14693 mRNA_6325 0.45 +1.8
553,166 + 14693 mRNA_6325 0.45 -0.1
553,305 + 14693 mRNA_6325 0.52 +1.3
553,325 - 14693 mRNA_6325 0.53 +0.6
553,351 + 14693 mRNA_6325 0.54 -0.6
553,438 - 14693 mRNA_6325 0.59 -0.9
553,456 - 14693 mRNA_6325 0.60 +0.2
553,457 - 14693 mRNA_6325 0.60 -0.9
553,460 + 14693 mRNA_6325 0.60 -0.7
553,464 + 14693 mRNA_6325 0.60 +0.3
553,477 - 14693 mRNA_6325 0.61 -0.0
553,479 - 14693 mRNA_6325 0.61 -0.3
553,480 + 14693 mRNA_6325 0.61 +0.2
553,522 - 14693 mRNA_6325 0.63 -0.4
553,545 - 14693 mRNA_6325 0.64 +1.8
553,546 + 14693 mRNA_6325 0.64 -1.3
553,546 + 14693 mRNA_6325 0.64 -0.4
553,546 - 14693 mRNA_6325 0.64 -0.3
553,548 - 14693 mRNA_6325 0.64 -2.5
553,560 + 14693 mRNA_6325 0.65 -0.2
553,582 + 14693 mRNA_6325 0.66 +0.2
553,587 - 14693 mRNA_6325 0.66 +1.7
553,592 - 14693 mRNA_6325 0.66 +0.1
553,595 - 14693 mRNA_6325 0.67 -1.4
553,614 - 14693 mRNA_6325 0.68 +0.3
553,623 + 14693 mRNA_6325 0.68 +0.5
553,623 + 14693 mRNA_6325 0.68 +0.1
553,629 - 14693 mRNA_6325 0.68 +1.9
553,632 + 14693 mRNA_6325 0.68 -0.0
553,634 - 14693 mRNA_6325 0.69 +0.2
553,647 - 14693 mRNA_6325 0.69 +0.4
553,652 + 14693 mRNA_6325 0.69 -0.1
553,653 + 14693 mRNA_6325 0.69 +0.8
553,657 + 14693 mRNA_6325 0.70 -2.2
553,661 + 14693 mRNA_6325 0.70 +0.8
553,670 + 14693 mRNA_6325 0.70 +0.1
553,673 - 14693 mRNA_6325 0.70 -1.2
553,673 + 14693 mRNA_6325 0.70 -0.1
553,687 + 14693 mRNA_6325 0.71 +1.5
553,711 + 14693 mRNA_6325 0.72 -0.7
553,728 + 14693 mRNA_6325 0.73 -2.0
553,730 + 14693 mRNA_6325 0.73 +1.8
553,740 + 14693 mRNA_6325 0.74 +2.2
553,762 + 14693 mRNA_6325 0.75 +1.4
553,768 - 14693 mRNA_6325 0.75 -1.1
553,774 - 14693 mRNA_6325 0.76 -0.9
553,778 + 14693 mRNA_6325 0.76 +1.6
553,779 - 14693 mRNA_6325 0.76 -0.1
553,785 - 14693 mRNA_6325 0.76 -0.2
553,786 + 14693 mRNA_6325 0.76 -0.8
553,786 + 14693 mRNA_6325 0.76 -1.2
553,791 + 14693 mRNA_6325 0.76 +0.4
553,851 - 14693 mRNA_6325 0.79 -0.1
553,866 - 14693 mRNA_6325 0.80 -1.5
553,878 - 14693 mRNA_6325 0.81 +0.8
553,895 - 14693 mRNA_6325 0.82 -0.3
553,923 + 14693 mRNA_6325 0.83 +0.4
553,934 - 14693 mRNA_6325 0.84 -0.4
553,945 - 14693 mRNA_6325 0.84 +0.1
553,963 - 14693 mRNA_6325 0.85 -1.2
553,978 + 14693 mRNA_6325 0.86 +0.6
554,030 + 14693 mRNA_6325 0.88 +0.7
554,050 + 14693 mRNA_6325 0.89 -1.1
554,055 - 14693 mRNA_6325 0.90 -1.5
554,061 + -0.7
554,072 + +1.2
554,080 + -0.1
554,087 - -0.5
554,105 + +0.6
554,211 + +1.4
554,306 + -0.0
554,331 + -0.2
554,350 - +0.7
554,368 - -1.3
554,369 + -1.1
554,378 + +0.4
554,494 - +1.8
554,502 - +1.1
554,511 + +0.6
554,517 - -0.0

Or see this region's nucleotide sequence