Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6338

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14705 and 14706 are separated by 64 nucleotides14706 and 14707 are separated by 600 nucleotides mRNA_6337: 14705 - Hypothetical Protein, at 579,453 to 580,646 14705 mRNA_6338: 14706 - KOG1515 Arylacetamide deacetylase, at 580,711 to 582,330 14706 mRNA_6339: 14707 - K03265 ETF1, ERF1 peptide chain release factor subunit 1, at 582,931 to 584,919 14707

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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580,091 - 14705 mRNA_6337 0.53 +0.4
580,392 - 14705 mRNA_6337 0.79 +0.3
580,682 - +0.8
580,804 + -0.5
581,004 + 14706 mRNA_6338 0.18 +0.4
581,004 - 14706 mRNA_6338 0.18 +0.3
581,272 - 14706 mRNA_6338 0.35 -0.7
581,443 + 14706 mRNA_6338 0.45 -0.9
581,714 + 14706 mRNA_6338 0.62 +0.4
582,249 - +0.3
582,264 - +2.0
582,268 + -0.9
582,277 + +0.9
582,284 - +1.1
582,429 + -1.6
582,606 - -1.3
582,621 - +1.4
582,628 + -1.0

Or see this region's nucleotide sequence