Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6422

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14788 and 14789 are separated by 215 nucleotides14789 and 14790 are separated by 0 nucleotides14790 and 14791 are separated by 412 nucleotides mRNA_6420: 14788 - K14263 BNA7 kynurenine formamidase, at 764,043 to 765,055 14788 mRNA_6421: 14789 - SUPERFAMILY--SSF82199, at 765,271 to 766,029 14789 mRNA_6422: 14790 - KOG2084 Predicted histone tail methylase containing SET domain, at 766,030 to 767,975 14790 mRNA_6423: 14791 - Hypothetical Protein, at 768,388 to 769,029 14791

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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765,047 - +0.4
765,100 - -0.3
765,101 - -0.7
765,124 - +0.1
765,129 + -1.9
765,131 - -0.1
765,132 - +0.9
765,141 - -0.2
765,155 + -0.6
765,251 + +0.9
765,289 + +0.2
765,402 - 14789 mRNA_6421 0.17 +0.1
765,561 - 14789 mRNA_6421 0.38 +0.3
765,684 + 14789 mRNA_6421 0.54 +0.9
765,722 + 14789 mRNA_6421 0.59 -0.4
766,229 - 14790 mRNA_6422 0.10 +0.2
766,555 - 14790 mRNA_6422 0.27 -1.5
766,659 + 14790 mRNA_6422 0.32 -1.7
766,878 + 14790 mRNA_6422 0.44 -0.4
767,143 + 14790 mRNA_6422 0.57 +0.0
767,163 + 14790 mRNA_6422 0.58 +0.0
767,234 - 14790 mRNA_6422 0.62 -1.4
767,323 + 14790 mRNA_6422 0.66 -0.1
767,352 + 14790 mRNA_6422 0.68 -0.8
767,355 - 14790 mRNA_6422 0.68 +1.4
767,469 + 14790 mRNA_6422 0.74 -0.9
767,555 - 14790 mRNA_6422 0.78 -0.4
767,708 - 14790 mRNA_6422 0.86 +0.1
767,862 + -0.2
767,863 + +0.8
767,872 + +1.3
768,001 + +0.4
768,116 + -0.2
768,297 + +0.5
768,306 - -0.5
768,312 + +0.3
768,366 + +0.3
768,595 + 14791 mRNA_6423 0.32 -1.1

Or see this region's nucleotide sequence