Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6423

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14790 and 14791 are separated by 412 nucleotides14791 and 14792 are separated by 86 nucleotides14792 and 14793 are separated by 109 nucleotides mRNA_6422: 14790 - KOG2084 Predicted histone tail methylase containing SET domain, at 766,030 to 767,975 14790 mRNA_6423: 14791 - Hypothetical Protein, at 768,388 to 769,029 14791 mRNA_6424: 14792 - Hypothetical Protein, at 769,116 to 769,372 14792 mRNA_6425: 14793 - SUPERFAMILY--SSF52047, at 769,482 to 770,429 14793

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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767,469 + 14790 mRNA_6422 0.74 -0.9
767,555 - 14790 mRNA_6422 0.78 -0.4
767,708 - 14790 mRNA_6422 0.86 +0.1
767,862 + -0.2
767,863 + +0.8
767,872 + +1.3
768,001 + +0.4
768,116 + -0.2
768,297 + +0.5
768,306 - -0.5
768,312 + +0.3
768,366 + +0.3
768,595 + 14791 mRNA_6423 0.32 -1.1
769,193 - 14792 mRNA_6424 0.30 -0.8
769,555 - -0.3
769,780 - 14793 mRNA_6425 0.31 -1.2

Or see this region's nucleotide sequence