Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6429

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14797 and 14798 are separated by 369 nucleotides mRNA_6429: 14797 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 784,165 to 784,634 14797 mRNA_6430: 14798 - KOG3112 Uncharacterized conserved protein, at 785,004 to 786,145 14798

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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783,168 - -0.3
783,195 - +0.6
783,295 - -0.1
783,483 - +0.6
783,489 + -0.6
783,500 + +2.2
783,601 - -0.2
783,618 + +0.0
783,628 + -0.2
783,630 - -0.0
783,632 - -0.1
783,639 + -3.0
783,640 + -1.4
783,647 + -0.1
783,664 + -2.2
783,664 + +0.3
783,674 + +0.6
783,676 - +0.5
783,679 + +0.3
783,701 + -1.5
783,777 - +1.4
783,812 - -2.4
783,924 - -1.1
783,947 - +0.2
783,949 - +0.2
783,954 + +1.8
783,979 + +0.4
783,988 - +0.4
784,012 - +1.3
784,055 + -1.2
784,070 + -2.0
784,077 + +0.0
784,084 - -1.7
784,122 + -0.5
784,258 - 14797 mRNA_6429 0.20 +0.1
784,479 + 14797 mRNA_6429 0.67 -1.1
784,808 - -1.0
784,827 - +0.3
784,827 + +0.1
784,924 + +1.2
784,941 - -1.3
784,968 + -1.9
784,972 - -2.1
784,976 + +0.4
784,980 + -0.1
785,096 + +2.7
785,100 - +0.0
785,101 + +0.3
785,103 + -0.3
785,113 - +1.9
785,124 - 14798 mRNA_6430 0.11 +1.3
785,141 - 14798 mRNA_6430 0.12 +0.0
785,358 - 14798 mRNA_6430 0.31 +1.0
785,406 - 14798 mRNA_6430 0.35 -1.9
785,406 - 14798 mRNA_6430 0.35 +1.2
785,481 - 14798 mRNA_6430 0.42 -2.5

Or see this region's nucleotide sequence