Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6442

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14809 and 14810 are separated by 40 nucleotides14810 and 14811 are separated by 414 nucleotides mRNA_6441: 14809 - K07200 PRKAG 5'-AMP-activated protein kinase, regulatory gamma subunit, at 803,025 to 805,267 14809 mRNA_6442: 14810 - Hypothetical Protein, at 805,308 to 806,483 14810 mRNA_6443: 14811 - K10427 DCTN5 dynactin 5, at 806,898 to 807,775 14811

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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804,328 - 14809 mRNA_6441 0.58 +0.7
804,424 + 14809 mRNA_6441 0.62 -0.3
804,711 + 14809 mRNA_6441 0.75 +0.0
804,715 + 14809 mRNA_6441 0.75 -0.8
805,114 - -1.4
805,131 + -0.1
805,151 - -2.4
805,182 + -1.2
805,306 + +0.2
805,315 + +0.1
805,328 + +0.1
805,353 + +1.2
805,447 - 14810 mRNA_6442 0.12 -0.9
805,465 + 14810 mRNA_6442 0.13 +0.5
805,469 + 14810 mRNA_6442 0.14 +0.4
805,488 - 14810 mRNA_6442 0.15 +1.6
805,491 + 14810 mRNA_6442 0.16 -0.1
805,503 + 14810 mRNA_6442 0.17 -0.3
805,619 + 14810 mRNA_6442 0.26 +0.5
805,745 - 14810 mRNA_6442 0.37 +0.9
805,757 - 14810 mRNA_6442 0.38 +0.5
805,766 + 14810 mRNA_6442 0.39 +2.3
805,771 + 14810 mRNA_6442 0.39 -0.4
805,960 + 14810 mRNA_6442 0.55 +0.8
805,990 + 14810 mRNA_6442 0.58 -1.4
806,061 + 14810 mRNA_6442 0.64 +0.9
806,130 - 14810 mRNA_6442 0.70 +0.5
806,281 + 14810 mRNA_6442 0.83 -0.5
806,515 + -0.1
806,651 - +0.2
806,658 + +1.3
806,669 + +0.3
806,771 + -1.3
806,804 - +1.0
807,360 - 14811 mRNA_6443 0.53 +2.2

Or see this region's nucleotide sequence