Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6456

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14823 and 14824 are separated by 363 nucleotides14824 and 14825 are separated by 148 nucleotides mRNA_6455: 14823 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 829,918 to 832,599 14823 mRNA_6456: 14824 - KOG3386 Copper transporter, at 832,963 to 833,757 14824 mRNA_6457: 14825 - Hypothetical Protein, at 833,906 to 834,580 14825

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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832,226 + 14823 mRNA_6455 0.86 +0.4
832,233 + 14823 mRNA_6455 0.86 +0.0
832,326 + 14823 mRNA_6455 0.90 +0.1
832,462 + +0.4
832,466 - +2.9
832,478 + +0.6
832,642 + -0.8
832,749 + +0.5
832,763 - -0.0
832,766 - -0.8
832,771 + -0.9
832,775 + +2.3
832,794 + +1.1
832,810 - -0.1
832,949 + -0.3
832,962 + -0.9
833,533 + 14824 mRNA_6456 0.72 -0.5
833,853 + -0.4
833,933 - +0.0
834,134 + 14825 mRNA_6457 0.34 -0.9
834,448 + 14825 mRNA_6457 0.80 -0.1
834,545 - -1.2
834,548 + -0.5

Or see this region's nucleotide sequence