Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6465

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14832 and 14833 are separated by 157 nucleotides14833 and 14834 are separated by 689 nucleotides mRNA_6464: 14832 - KOG1609 Protein involved in mRNA turnover and stability, at 845,418 to 846,912 14832 mRNA_6465: 14833 - Hypothetical Protein, at 847,070 to 847,704 14833 mRNA_6466: 14834 - Hypothetical Protein, at 848,394 to 849,782 14834

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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846,116 + 14832 mRNA_6464 0.47 -0.4
846,203 - 14832 mRNA_6464 0.53 -1.0
846,484 - 14832 mRNA_6464 0.71 -0.1
846,502 - 14832 mRNA_6464 0.73 -0.3
846,511 + 14832 mRNA_6464 0.73 -1.2
846,635 - 14832 mRNA_6464 0.81 +0.9
846,650 - 14832 mRNA_6464 0.82 -1.1
846,653 - 14832 mRNA_6464 0.83 -0.9
846,661 + 14832 mRNA_6464 0.83 -2.0
846,675 + 14832 mRNA_6464 0.84 -0.7
846,806 + -0.0
846,811 + -1.9
846,828 + -0.3
847,056 + -0.0
847,494 + 14833 mRNA_6465 0.67 -0.6
847,494 - 14833 mRNA_6465 0.67 -1.5
847,530 + 14833 mRNA_6465 0.72 +0.9
847,575 + 14833 mRNA_6465 0.80 +2.8
847,634 + 14833 mRNA_6465 0.89 +1.2
847,820 + -0.6
847,867 - +0.8
847,980 + +1.9
847,993 - +0.4
848,084 + +0.1
848,110 - +1.8
848,135 + -0.6
848,136 - -1.2
848,144 + +0.4
848,271 - +0.2
848,388 - +0.5
848,416 + +1.0
848,430 + +0.0
848,556 - 14834 mRNA_6466 0.12 +1.0
848,559 - 14834 mRNA_6466 0.12 -0.2
848,650 - 14834 mRNA_6466 0.18 -0.3
848,674 - 14834 mRNA_6466 0.20 +0.8

Or see this region's nucleotide sequence