Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6491

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14858 and 14859 are separated by 291 nucleotides14859 and 14860 are separated by 621 nucleotides mRNA_6490: 14858 - KOG1698 Mitochondrial/chloroplast ribosomal protein L19, at 911,663 to 912,456 14858 mRNA_6491: 14859 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 912,748 to 918,213 14859 mRNA_6492: 14860 - KOG3269 Predicted membrane protein, at 918,835 to 919,868 14860

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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912,405 + +1.5
912,748 - +3.0
912,750 + -0.9
912,759 + +0.3
912,890 + -2.5
913,187 - -0.6
913,188 + -0.3
913,344 - 14859 mRNA_6491 0.11 +1.6
913,357 - 14859 mRNA_6491 0.11 +0.2
913,454 + 14859 mRNA_6491 0.13 -0.0
913,598 + 14859 mRNA_6491 0.16 +0.5
913,720 + 14859 mRNA_6491 0.18 +0.2
913,758 - 14859 mRNA_6491 0.18 +0.1
913,911 + 14859 mRNA_6491 0.21 -1.0
913,924 - 14859 mRNA_6491 0.22 +0.4
913,928 + 14859 mRNA_6491 0.22 +0.2
913,944 + 14859 mRNA_6491 0.22 +0.2
914,148 + 14859 mRNA_6491 0.26 +0.4
914,379 + 14859 mRNA_6491 0.30 -1.7
914,447 + 14859 mRNA_6491 0.31 -0.2
914,489 + 14859 mRNA_6491 0.32 +2.5
914,854 + 14859 mRNA_6491 0.39 -1.8
915,176 - 14859 mRNA_6491 0.44 +0.3
915,321 + 14859 mRNA_6491 0.47 -2.8
915,411 - 14859 mRNA_6491 0.49 -0.2
915,423 - 14859 mRNA_6491 0.49 -0.3
915,684 + 14859 mRNA_6491 0.54 -0.9
916,221 + 14859 mRNA_6491 0.64 -0.5
916,360 - 14859 mRNA_6491 0.66 -2.2
916,509 - 14859 mRNA_6491 0.69 -0.3
916,561 + 14859 mRNA_6491 0.70 +2.0
916,763 - 14859 mRNA_6491 0.73 -0.6
916,804 + 14859 mRNA_6491 0.74 +0.7
917,070 - 14859 mRNA_6491 0.79 -0.2
917,112 - 14859 mRNA_6491 0.80 -0.1
917,538 - 14859 mRNA_6491 0.88 +0.2
917,550 + 14859 mRNA_6491 0.88 +1.4
918,114 - +2.3
918,383 - +0.3
918,390 + +0.5
918,419 + +0.7
918,420 + -0.8
918,439 - -1.1
918,439 + +2.2
918,582 - -0.8
918,583 - -0.6
918,586 + +0.5
919,005 - 14860 mRNA_6492 0.16 +0.3
919,023 + 14860 mRNA_6492 0.18 -1.2

Or see this region's nucleotide sequence