Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6497

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14863 and 14864 are separated by 265 nucleotides14864 and 14865 are separated by 90 nucleotides14865 and 14866 are separated by 147 nucleotides mRNA_6495: 14863 - Hypothetical Protein, at 925,916 to 926,829 14863 mRNA_6496: 14864 - HMMPfam-Fungal protein of unknown function (DUF1748)-PF08520, at 927,095 to 927,579 14864 mRNA_6497: 14865 - HMMPfam-Peptidase family M28-PF04389,SUPERFAMILY--SSF53187, at 927,670 to 929,364 14865 mRNA_6498: 14866 - K00226 pyrD dihydroorotate dehydrogenase (fumarate), at 929,512 to 931,049 14866

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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926,764 + -0.0
926,780 - +1.5
926,926 + +0.2
927,050 - -1.6
927,079 + +1.4
927,376 + 14864 mRNA_6496 0.58 -1.7
927,610 - -0.9
927,610 - +0.4
927,648 + -0.8
927,673 - -0.4
927,677 - -0.2
927,683 - -1.7
927,697 + -1.1
927,823 - +0.1
928,685 + 14865 mRNA_6497 0.60 +0.1
929,115 + 14865 mRNA_6497 0.85 +0.7
929,124 - 14865 mRNA_6497 0.86 +0.7
929,137 + 14865 mRNA_6497 0.87 -0.1
929,546 - -0.6
929,560 - -0.3
930,001 - 14866 mRNA_6498 0.32 -1.2
930,147 + 14866 mRNA_6498 0.41 -0.6

Or see this region's nucleotide sequence