Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6511

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14878 and 14879 are separated by 142 nucleotides14879 and 14880 are separated by 700 nucleotides mRNA_6510: 14878 - K00818 E2.6.1.11, argD acetylornithine aminotransferase, at 955,523 to 957,319 14878 mRNA_6511: 14879 - KOG1061 Vesicle coat complex AP-1/AP-2/AP-4, beta subunit, at 957,462 to 960,234 14879 mRNA_6512: 14880 - KOG1089 Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6, at 960,935 to 963,520 14880

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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956,677 - 14878 mRNA_6510 0.64 -0.6
956,980 - 14878 mRNA_6510 0.81 -0.4
956,982 - 14878 mRNA_6510 0.81 +0.2
957,092 - 14878 mRNA_6510 0.87 +0.9
957,095 - 14878 mRNA_6510 0.87 +2.1
957,116 - 14878 mRNA_6510 0.89 -1.4
957,116 + 14878 mRNA_6510 0.89 +0.8
957,388 - +0.1
957,390 + -0.0
957,390 - +2.2
957,397 - +2.1
957,404 + -2.2
957,415 - -0.2
957,580 + +1.6
958,293 + 14879 mRNA_6511 0.30 +0.0
958,891 + 14879 mRNA_6511 0.52 +0.3
959,873 + 14879 mRNA_6511 0.87 +1.8
960,103 - -0.9
960,103 - -0.2
960,103 - +0.2
960,109 + +1.3
960,185 + -1.6
960,203 - -0.0
960,204 + -0.6
960,207 - -1.2
960,217 + -0.2
960,363 - -0.1
960,525 - -0.2
960,639 + -0.6
960,663 + -1.8
960,696 + +0.1
960,791 + -1.3
960,797 - -1.2
960,825 + +0.2
960,839 + +1.9
960,942 + -0.3

Or see this region's nucleotide sequence