Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6529

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14896 and 14897 are separated by 297 nucleotides mRNA_6528: 14896 - K01514 PRUNE, PPX1 exopolyphosphatase, at 1,007,263 to 1,008,621 14896 mRNA_6529: 14897 - K03626 EGD2, NACA nascent polypeptide-associated complex subunit alpha, at 1,008,919 to 1,009,693 14897

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,007,928 + 14896 mRNA_6528 0.49 +1.1
1,008,165 - 14896 mRNA_6528 0.66 +0.3
1,008,630 - +2.0
1,008,876 - +1.0
1,008,979 + +2.1
1,009,000 - 14897 mRNA_6529 0.10 -0.4
1,009,021 - 14897 mRNA_6529 0.13 -0.8
1,009,146 + 14897 mRNA_6529 0.29 -2.2
1,009,197 - 14897 mRNA_6529 0.36 -0.4
1,009,207 - 14897 mRNA_6529 0.37 +1.5
1,009,304 - 14897 mRNA_6529 0.50 +1.6
1,009,438 - 14897 mRNA_6529 0.67 +0.3
1,009,450 - 14897 mRNA_6529 0.69 +1.2
1,010,031 + +0.5
1,010,473 - -2.2

Or see this region's nucleotide sequence