Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6534

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14901 and 14902 are separated by 685 nucleotides mRNA_6533: 14901 - Hypothetical Protein, at 1,016,607 to 1,018,087 14901 mRNA_6534: 14902 - HMMPfam-Opy2 protein-PF09463, at 1,018,773 to 1,021,328 14902

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,017,830 + 14901 mRNA_6533 0.83 +2.0
1,017,960 - +0.5
1,018,430 - +2.2
1,018,432 - -1.3
1,018,611 + +1.6
1,018,706 - -0.7
1,018,710 + -0.2
1,019,042 + 14902 mRNA_6534 0.11 -1.7
1,019,615 - 14902 mRNA_6534 0.33 +0.2
1,021,338 + -1.1
1,021,479 - +1.2
1,021,492 - +0.5
1,021,496 - +0.8
1,021,502 - +0.3
1,021,507 + +0.5
1,021,515 + -1.2
1,021,796 - +1.0
1,021,912 - -0.1
1,021,948 + +2.0
1,021,952 - -2.5
1,022,080 + -0.7
1,022,087 + +0.9
1,022,087 + -0.1

Or see this region's nucleotide sequence