Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6540

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14907 and 14908 are separated by 586 nucleotides14908 and 14909 are separated by 807 nucleotides mRNA_6539: 14907 - K19800 SCH9 serine/threonine protein kinase SCH9, at 1,028,539 to 1,031,379 14907 mRNA_6540: 14908 - K00838 ARO8 aromatic amino acid aminotransferase I, at 1,031,966 to 1,033,668 14908 mRNA_6541: 14909 - K14819 DUSP12, YVH1 dual specificity phosphatase 12, at 1,034,476 to 1,036,379 14909

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,031,098 + -1.3
1,031,200 + -1.6
1,031,200 - -1.0
1,031,826 + -1.4
1,032,394 - 14908 mRNA_6540 0.25 +0.1
1,032,683 + 14908 mRNA_6540 0.42 -2.0
1,032,685 + 14908 mRNA_6540 0.42 +1.4
1,032,686 - 14908 mRNA_6540 0.42 +1.4
1,032,714 - 14908 mRNA_6540 0.44 -1.3
1,032,717 + 14908 mRNA_6540 0.44 -0.5
1,032,824 + 14908 mRNA_6540 0.50 -0.1
1,032,907 - 14908 mRNA_6540 0.55 -0.3
1,033,938 + +0.6
1,033,992 + +0.2
1,034,140 + -1.8
1,034,297 - -0.2
1,034,412 - -0.5
1,034,418 - -0.0
1,034,422 - -0.6

Or see this region's nucleotide sequence