Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6592

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14959 and 14960 are separated by 356 nucleotides14960 and 14961 are separated by 544 nucleotides mRNA_6591: 14959 - K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6, at 1,172,808 to 1,176,820 14959 mRNA_6592: 14960 - KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases), at 1,177,177 to 1,181,389 14960 mRNA_6593: 14961 - KOG1616 Protein involved in Snf1 protein kinase complex assembly, at 1,181,934 to 1,184,760 14961

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,176,179 - 14959 mRNA_6591 0.84 -1.2
1,176,217 - 14959 mRNA_6591 0.85 +0.1
1,176,304 + 14959 mRNA_6591 0.87 -0.1
1,176,336 - 14959 mRNA_6591 0.88 -0.1
1,176,344 - 14959 mRNA_6591 0.88 +0.3
1,176,366 + 14959 mRNA_6591 0.89 +0.3
1,176,373 - 14959 mRNA_6591 0.89 -1.2
1,176,528 + +1.7
1,176,671 - -0.2
1,176,842 + -1.6
1,176,979 + +0.8
1,177,099 - -0.2
1,177,114 - -1.1
1,177,114 - +0.7
1,177,115 + -1.0
1,177,126 + -0.7
1,177,129 - +0.6
1,177,281 - +0.0
1,177,283 + -0.5
1,177,304 - -0.6
1,177,308 - -0.4
1,177,330 - +0.4
1,177,558 + +1.3
1,177,592 + -1.1
1,178,362 + 14960 mRNA_6592 0.28 +1.2
1,178,632 - 14960 mRNA_6592 0.35 -0.3
1,178,638 + 14960 mRNA_6592 0.35 +0.4
1,179,106 - 14960 mRNA_6592 0.46 +0.1
1,179,238 + 14960 mRNA_6592 0.49 -0.8
1,179,241 - 14960 mRNA_6592 0.49 +1.8
1,179,334 + 14960 mRNA_6592 0.51 +0.4
1,179,499 - 14960 mRNA_6592 0.55 -1.2
1,179,626 - 14960 mRNA_6592 0.58 -0.0
1,179,633 + 14960 mRNA_6592 0.58 +0.9
1,179,834 - 14960 mRNA_6592 0.63 -1.2
1,180,058 - 14960 mRNA_6592 0.68 +0.2
1,180,268 + 14960 mRNA_6592 0.73 +0.4
1,180,478 + 14960 mRNA_6592 0.78 +0.8
1,180,648 - 14960 mRNA_6592 0.82 -0.5
1,180,648 - 14960 mRNA_6592 0.82 -0.3
1,180,658 + 14960 mRNA_6592 0.83 +0.9
1,180,660 + 14960 mRNA_6592 0.83 -0.8
1,181,418 + -1.5
1,181,529 + -0.1
1,181,571 + +0.9
1,181,653 - -2.1
1,181,693 + +1.2
1,181,699 - +1.4
1,181,708 + -0.3

Or see this region's nucleotide sequence