Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6777

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15144 and 15145 are separated by 286 nucleotides mRNA_6776: 15144 - KOG1183 N-acetylglucosaminyltransferase complex, subunit PIG-Q/GPI1, required for phosphatidylinositol biosynthesis, at 106,666 to 108,156 15144 mRNA_6777: 15145 - Hypothetical Protein, at 108,443 to 109,222 15145

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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107,604 - 15144 mRNA_6776 0.63 +1.4
108,950 - 15145 mRNA_6777 0.65 -1.1
108,956 + 15145 mRNA_6777 0.66 -2.2
109,558 - +0.4
109,695 + -1.0
109,844 - -0.4
109,911 + -1.7
110,113 + -0.7

Or see this region's nucleotide sequence