Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6779

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15146 and 15147 are separated by 67 nucleotides15147 and 15148 are separated by 38 nucleotides mRNA_6778: 15146 - K00565 RNMT mRNA (guanine-N7-)-methyltransferase, at 113,056 to 114,676 15146 mRNA_6779: 15147 - K10998 CSM3, SWI3 replication fork protection complex subunit Csm3/Swi3, at 114,744 to 115,894 15147 mRNA_6780: 15148 - KOG4288 Predicted oxidoreductase, at 115,933 to 117,029 15148

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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114,671 - -0.4
114,706 - +0.3
115,764 + 15147 mRNA_6779 0.89 +0.7

Or see this region's nucleotide sequence