Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6835

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15202 and 15203 are separated by 468 nucleotides mRNA_6834: 15202 - KOG3030 Lipid phosphate phosphatase and related enzymes of the PAP2 family, at 233,665 to 235,762 15202 mRNA_6835: 15203 - Hypothetical Protein, at 236,231 to 236,767 15203

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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235,482 - 15202 mRNA_6834 0.87 +0.1
235,496 - 15202 mRNA_6834 0.87 +1.0
235,612 - -0.1
235,793 - -0.3
236,026 + +0.5
236,086 + +0.0
236,202 + -1.2
236,224 - +0.3
236,267 + +1.8
236,397 - 15203 mRNA_6835 0.31 -1.8
236,526 - 15203 mRNA_6835 0.55 -0.3
236,604 + 15203 mRNA_6835 0.69 +0.2
236,621 + 15203 mRNA_6835 0.73 +1.6
236,621 + 15203 mRNA_6835 0.73 -0.5
236,629 + 15203 mRNA_6835 0.74 -2.4
236,636 + 15203 mRNA_6835 0.75 -1.6
236,687 - 15203 mRNA_6835 0.85 +0.1
236,694 + 15203 mRNA_6835 0.86 +1.6
236,710 - 15203 mRNA_6835 0.89 -1.3
236,789 - -1.7
236,811 - -0.1
236,813 + -1.5
236,817 - -0.6
236,818 + -1.2
236,823 - +0.0
236,824 - +0.8
236,825 - -0.7
236,829 - -1.3
236,831 + -0.0
236,836 - -0.1
236,836 - -1.1
236,836 - -1.6
236,840 + -0.6
236,840 + +0.6
236,858 - +0.3
236,991 + -0.7
237,010 + +0.6
237,025 - -2.0
237,027 - -0.3
237,055 - -1.6
237,064 - +0.3
237,109 + -0.1
237,145 - +0.5
237,145 - -0.9
237,154 + +0.2
237,159 + -1.5
237,262 + -1.5
237,266 + -1.0
237,274 + -0.8
237,274 + -0.8
237,278 + -0.2
237,292 + +0.0
237,299 - +0.2
237,325 - -1.4
237,333 - +1.5
237,361 + -0.1
237,366 + +0.4
237,377 + +1.1
237,378 + -3.1
237,378 + +1.5
237,384 + +0.6
237,415 - +0.2
237,428 + +0.8
237,475 + -0.6
237,519 - -0.2
237,519 - +0.8
237,521 - +1.5
237,526 + +1.3
237,531 + +0.0
237,533 - +0.1
237,533 - -1.0
237,541 + +3.1
237,541 + +2.7
237,541 + -1.9
237,541 + +0.4
237,545 - -0.2
237,557 - -1.0
237,563 + +1.1
237,571 - +1.1
237,571 - +0.8

Or see this region's nucleotide sequence