Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6849

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15217 and 15218 are separated by 138 nucleotides mRNA_6849: 15217 - K14686 SLC31A1, CTR1 solute carrier family 31 (copper transporter), member 1, at 269,969 to 271,865 15217 mRNA_6850: 15218 - K05605 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, at 272,004 to 274,065 15218

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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269,079 - +0.2
269,287 - +1.1
269,451 - +1.2
269,630 + +1.2
269,697 + +0.2
269,859 - +0.3
269,859 - +0.2
269,873 + +1.0
269,880 - +0.1
269,886 + +0.6
270,007 - +0.5
270,024 + -1.9
270,027 + +0.5
270,071 - -1.8
270,126 - +0.8
270,127 + -0.4
270,258 + 15217 mRNA_6849 0.15 -1.2
270,269 - 15217 mRNA_6849 0.16 +1.2
270,469 + 15217 mRNA_6849 0.26 +1.2
270,505 - 15217 mRNA_6849 0.28 -0.7
270,729 + 15217 mRNA_6849 0.40 +1.7
270,782 - 15217 mRNA_6849 0.43 +2.1
270,989 + 15217 mRNA_6849 0.54 -1.0
270,991 - 15217 mRNA_6849 0.54 -0.0
271,214 - 15217 mRNA_6849 0.66 -0.7
271,229 + 15217 mRNA_6849 0.66 -0.3
271,247 - 15217 mRNA_6849 0.67 +2.3
271,255 + 15217 mRNA_6849 0.68 -1.1
271,268 + 15217 mRNA_6849 0.68 +0.8
271,292 - 15217 mRNA_6849 0.70 -0.6
271,304 - 15217 mRNA_6849 0.70 +0.8
271,305 + 15217 mRNA_6849 0.70 -0.2
271,305 + 15217 mRNA_6849 0.70 -0.6
271,314 - 15217 mRNA_6849 0.71 +0.3
271,330 - 15217 mRNA_6849 0.72 +1.4
271,343 + 15217 mRNA_6849 0.72 -0.3
271,351 + 15217 mRNA_6849 0.73 +0.1
271,351 - 15217 mRNA_6849 0.73 +0.1
271,352 + 15217 mRNA_6849 0.73 +0.1
271,353 - 15217 mRNA_6849 0.73 -0.9
271,357 - 15217 mRNA_6849 0.73 +0.6
271,365 + 15217 mRNA_6849 0.74 -2.0
271,369 - 15217 mRNA_6849 0.74 +0.3
271,370 - 15217 mRNA_6849 0.74 +0.3
271,370 - 15217 mRNA_6849 0.74 -0.7
271,372 + 15217 mRNA_6849 0.74 -0.9
271,374 - 15217 mRNA_6849 0.74 +0.0
271,377 - 15217 mRNA_6849 0.74 +1.5
271,379 - 15217 mRNA_6849 0.74 -0.2
271,386 + 15217 mRNA_6849 0.75 -0.9
271,386 + 15217 mRNA_6849 0.75 +0.1
271,389 + 15217 mRNA_6849 0.75 +0.5
271,391 + 15217 mRNA_6849 0.75 +0.5
271,396 - 15217 mRNA_6849 0.75 -0.0
271,405 - 15217 mRNA_6849 0.76 -0.0
271,416 + 15217 mRNA_6849 0.76 -2.6
271,429 - 15217 mRNA_6849 0.77 -1.7
271,440 - 15217 mRNA_6849 0.78 -1.7
271,445 + 15217 mRNA_6849 0.78 -0.8
271,453 - 15217 mRNA_6849 0.78 -0.2
271,454 + 15217 mRNA_6849 0.78 +0.2
271,461 + 15217 mRNA_6849 0.79 +2.0
271,461 + 15217 mRNA_6849 0.79 +0.6
271,470 + 15217 mRNA_6849 0.79 -0.7
271,473 + 15217 mRNA_6849 0.79 -0.3
271,480 - 15217 mRNA_6849 0.80 +0.4
271,482 - 15217 mRNA_6849 0.80 -0.6
271,494 + 15217 mRNA_6849 0.80 +1.3
271,497 + 15217 mRNA_6849 0.81 +0.2
271,518 - 15217 mRNA_6849 0.82 -0.2
271,529 + 15217 mRNA_6849 0.82 +1.3
271,535 - 15217 mRNA_6849 0.83 -0.8
271,544 + 15217 mRNA_6849 0.83 -0.0
271,629 - 15217 mRNA_6849 0.88 +0.3
271,656 + 15217 mRNA_6849 0.89 +0.0
271,677 + -3.0
271,706 + -1.1
271,785 - +0.5
271,795 - +0.3
271,812 + +2.4
271,822 + -0.0
271,822 + -0.5
271,824 - +0.3
271,830 + +0.5
271,861 - +0.6
271,932 - -0.9
271,936 - -0.2
271,940 + +0.5
271,943 + -1.6
271,947 + -0.2
271,950 - -0.5
271,954 - +0.2
271,955 - -1.1
271,956 + +1.1
271,957 - -0.4
271,958 + -0.3
271,964 + -1.2
271,970 + -0.5
271,972 + +0.1
271,982 + -2.8
272,087 - -0.9
272,103 - -0.2
272,112 + +0.3
272,120 + +0.5
272,123 + +1.1
272,148 - -1.4
272,242 - 15218 mRNA_6850 0.12 +1.1
272,243 + 15218 mRNA_6850 0.12 +0.2
272,251 - 15218 mRNA_6850 0.12 +0.5
272,386 - 15218 mRNA_6850 0.19 -1.3
272,388 - 15218 mRNA_6850 0.19 -0.4
272,398 + 15218 mRNA_6850 0.19 -1.0
272,403 - 15218 mRNA_6850 0.19 +1.3
272,409 + 15218 mRNA_6850 0.20 -0.0
272,687 - 15218 mRNA_6850 0.33 -1.9
272,702 + 15218 mRNA_6850 0.34 +1.4
272,745 + 15218 mRNA_6850 0.36 +0.4
272,749 - 15218 mRNA_6850 0.36 +0.7
272,826 - 15218 mRNA_6850 0.40 +1.3

Or see this region's nucleotide sequence