Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6856

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15223 and 15224 are separated by 288 nucleotides mRNA_6855: 15223 - KOG1601 GATA-4/5/6 transcription factors, at 282,233 to 283,773 15223 mRNA_6856: 15224 - K10395 KIF4_21_27 kinesin family member 4/21/27, at 284,062 to 291,229 15224

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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283,072 + 15223 mRNA_6855 0.54 +1.4
283,225 - 15223 mRNA_6855 0.64 +0.1
283,306 + 15223 mRNA_6855 0.70 +1.8
283,374 + 15223 mRNA_6855 0.74 -1.6
283,528 - 15223 mRNA_6855 0.84 +0.8
283,671 - +0.4
283,675 + +0.2
283,681 - -0.2
283,682 - +1.2
283,684 - -1.1
283,687 - +0.8
283,703 + +0.8
283,710 - +1.0
283,718 + -0.5
283,834 + -0.4
283,985 + +2.1
283,989 - -0.6
283,991 - +1.7
283,991 + +1.8
284,019 - -1.3
284,134 - -1.0
284,136 - +1.3
284,286 - -1.2
284,468 - -1.5
284,652 + -0.1
284,858 - 15224 mRNA_6856 0.11 -1.1
284,911 + 15224 mRNA_6856 0.12 -0.5
285,014 + 15224 mRNA_6856 0.13 -1.9
285,319 - 15224 mRNA_6856 0.18 -1.0
285,337 - 15224 mRNA_6856 0.18 -0.1
285,396 + 15224 mRNA_6856 0.19 -0.9
285,603 - 15224 mRNA_6856 0.21 +0.8
285,605 + 15224 mRNA_6856 0.22 +0.4
285,861 - 15224 mRNA_6856 0.25 +0.8
286,103 + 15224 mRNA_6856 0.28 +1.6
286,218 + 15224 mRNA_6856 0.30 +0.3
286,221 + 15224 mRNA_6856 0.30 +0.3
286,246 + 15224 mRNA_6856 0.30 -1.0
286,372 - 15224 mRNA_6856 0.32 +0.3
286,373 + 15224 mRNA_6856 0.32 -0.5
286,565 + 15224 mRNA_6856 0.35 +0.8
286,578 - 15224 mRNA_6856 0.35 -2.0
286,637 - 15224 mRNA_6856 0.36 -1.7
286,715 + 15224 mRNA_6856 0.37 +0.3
286,721 + 15224 mRNA_6856 0.37 +0.2
286,773 + 15224 mRNA_6856 0.38 +0.8
286,795 - 15224 mRNA_6856 0.38 +0.5
286,972 + 15224 mRNA_6856 0.41 -0.6
287,068 + 15224 mRNA_6856 0.42 +0.4
287,125 - 15224 mRNA_6856 0.43 +0.8
287,133 + 15224 mRNA_6856 0.43 +1.6
287,144 - 15224 mRNA_6856 0.43 -1.3
287,584 - 15224 mRNA_6856 0.49 +0.3
287,615 + 15224 mRNA_6856 0.50 +1.1
287,619 + 15224 mRNA_6856 0.50 -0.0
287,860 + 15224 mRNA_6856 0.53 -0.7
287,924 - 15224 mRNA_6856 0.54 +1.3
288,249 - 15224 mRNA_6856 0.58 +0.3
288,326 - 15224 mRNA_6856 0.59 +0.5
288,401 + 15224 mRNA_6856 0.61 -0.0
288,416 - 15224 mRNA_6856 0.61 +0.3
288,688 + 15224 mRNA_6856 0.65 -0.6
288,693 + 15224 mRNA_6856 0.65 +1.0
288,797 + 15224 mRNA_6856 0.66 +0.2
289,385 - 15224 mRNA_6856 0.74 +0.1
289,601 + 15224 mRNA_6856 0.77 -0.9
289,864 + 15224 mRNA_6856 0.81 -0.7
290,024 - 15224 mRNA_6856 0.83 -2.8
290,215 - 15224 mRNA_6856 0.86 +0.2
290,323 - 15224 mRNA_6856 0.87 +0.5
290,330 + 15224 mRNA_6856 0.87 +0.9
290,424 - 15224 mRNA_6856 0.89 -1.1
290,470 + 15224 mRNA_6856 0.89 +0.0
290,667 - +0.1
290,778 + -0.6
290,887 + +1.0
290,909 + +0.3
290,930 + -0.4
290,941 + +1.3
291,056 + +1.0
291,056 - -1.0
291,219 - +0.9
291,225 - +0.7
291,321 - +0.3
291,324 - -0.3
291,325 - +0.2
291,662 + +0.0
291,838 + -0.0
291,975 + +0.8
292,093 + -0.6
292,120 + +0.1

Or see this region's nucleotide sequence