Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6862

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15229 and 15230 are separated by 59 nucleotides15230 and 15231 are separated by 413 nucleotides15231 and 15232 are separated by 162 nucleotides mRNA_6861: 15229 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 301,646 to 303,773 15229 mRNA_6862: 15230 - KOG0754 Mitochondrial oxodicarboxylate carrier protein, at 303,833 to 305,130 15230 mRNA_6863: 15231 - HMMPfam-Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like-PF05365,SUPERFAMILY--SSF81514, at 305,544 to 305,791 15231 mRNA_6864: 15232 - K18416 THEX1, ERI1 3'-5' exoribonuclease 1, at 305,954 to 308,144 15232

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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303,047 + 15229 mRNA_6861 0.66 -1.7
303,055 + 15229 mRNA_6861 0.66 +0.7
303,140 + 15229 mRNA_6861 0.70 +0.2
303,179 - 15229 mRNA_6861 0.72 +0.6
303,632 + +0.0
303,758 - +0.7
303,761 - +2.0
303,811 - +0.0
304,083 - 15230 mRNA_6862 0.19 -0.9
304,498 + 15230 mRNA_6862 0.51 -0.1
304,611 - 15230 mRNA_6862 0.60 -2.9
304,631 - 15230 mRNA_6862 0.61 -2.0
304,633 - 15230 mRNA_6862 0.62 -0.6
304,635 + 15230 mRNA_6862 0.62 -0.9
305,036 - -0.3
305,038 - +1.7
305,225 + +1.6
305,235 - +0.5
305,342 - +1.0
305,350 + +2.0
305,374 - -0.8
305,463 - +2.8

Or see this region's nucleotide sequence