Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6944

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15311 and 15312 are separated by 475 nucleotides15312 and 15313 are separated by 291 nucleotides mRNA_6943: 15311 - SUPERFAMILY--SSF52047, at 493,796 to 495,109 15311 mRNA_6944: 15312 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 495,585 to 496,942 15312 mRNA_6945: 15313 - SUPERFAMILY--SSF52047, at 497,234 to 499,004 15313

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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495,065 - +4.9
495,084 + +0.5
495,198 - -0.4
495,205 + -0.6
495,215 + +0.0
495,623 - -0.2
495,629 - +0.7
495,635 + -0.5
495,636 - -1.2
496,232 - 15312 mRNA_6944 0.48 +0.0
496,680 - 15312 mRNA_6944 0.81 -0.4
496,864 - -0.8
496,886 - -0.8
496,974 - -0.5
496,989 - -0.1
497,002 - +1.7
497,148 + -0.3
497,294 - +0.6
497,438 + 15313 mRNA_6945 0.12 -0.9
497,449 - 15313 mRNA_6945 0.12 -0.7
497,459 + 15313 mRNA_6945 0.13 +1.1
497,594 - 15313 mRNA_6945 0.20 -0.2
497,597 + 15313 mRNA_6945 0.20 -0.8

Or see this region's nucleotide sequence