Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6950

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15318 and 15319 are separated by 586 nucleotides mRNA_6950: 15318 - KOG4505 Na+/H+ antiporter, at 508,659 to 510,404 15318 mRNA_6951: 15319 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 510,991 to 511,843 15319

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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507,850 + -0.7
507,964 - -0.3
507,991 - -0.8
508,079 - -0.7
508,148 + +1.2
508,263 - -1.1
508,272 - +0.8
508,274 - +1.9
508,275 - +1.1
508,276 - -0.2
508,288 + -0.4
508,290 - +1.3
508,296 - -0.6
508,297 - -0.5
508,299 - -1.9
508,304 + -1.3
508,304 + +0.1
508,310 + -0.2
508,319 + +1.8
508,328 + -0.1
508,449 - -0.5
508,449 - +1.4
508,473 + -0.9
508,479 - +2.4
508,610 + +0.9
508,766 + -0.7
509,050 - 15318 mRNA_6950 0.22 +0.5
509,183 - 15318 mRNA_6950 0.30 +0.3
509,305 + 15318 mRNA_6950 0.37 +1.0
509,368 + 15318 mRNA_6950 0.41 +0.3
509,464 + 15318 mRNA_6950 0.46 +0.8
509,810 + 15318 mRNA_6950 0.66 +1.2
510,074 + 15318 mRNA_6950 0.81 -0.4
510,235 + +1.9
510,523 + +0.4
510,527 - +0.0
510,617 - +1.7
510,634 + -0.3
510,652 - +0.7
510,787 - +2.4
510,787 - +0.1
510,788 - +1.2
511,382 + 15319 mRNA_6951 0.46 +1.9
511,393 + 15319 mRNA_6951 0.47 +0.6

Or see this region's nucleotide sequence