Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6989

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15356 and 15357 are separated by 70 nucleotides15357 and 15358 are separated by 508 nucleotides mRNA_6988: 15356 - K00485 FMO dimethylaniline monooxygenase (N-oxide forming), at 609,889 to 611,754 15356 mRNA_6989: 15357 - K11836 USP5_13, UBP14 ubiquitin carboxyl-terminal hydrolase 5/13, at 611,825 to 615,054 15357 mRNA_6990: 15358 - K09001 anmK anhydro-N-acetylmuramic acid kinase, at 615,563 to 617,347 15358

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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610,863 + 15356 mRNA_6988 0.52 -0.3
610,886 + 15356 mRNA_6988 0.53 -0.5
611,440 - 15356 mRNA_6988 0.83 -0.6
611,583 + +0.5
611,759 - +0.2
612,011 - +2.8
612,030 - +1.9
612,034 + +1.6
612,644 - 15357 mRNA_6989 0.25 +2.0
613,187 - 15357 mRNA_6989 0.42 +2.1
613,348 + 15357 mRNA_6989 0.47 +2.5
613,519 + 15357 mRNA_6989 0.52 +0.5
613,943 + 15357 mRNA_6989 0.66 +4.0
614,099 - 15357 mRNA_6989 0.70 +2.5
614,997 + +2.9
615,102 + -0.6
615,445 - +0.1
615,562 - +0.3
615,655 + -0.4
615,807 - 15358 mRNA_6990 0.14 +0.6
615,961 - 15358 mRNA_6990 0.22 -1.6
615,975 + 15358 mRNA_6990 0.23 +0.6

Or see this region's nucleotide sequence