Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7079

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15446 and 15447 are separated by 462 nucleotides15447 and 15448 are separated by 138 nucleotides mRNA_7078: 15446 - Hypothetical Protein, at 831,735 to 832,558 15446 mRNA_7079: 15447 - Hypothetical Protein, at 833,021 to 833,925 15447 mRNA_7080: 15448 - K12481 RBSN, ZFYVE20 rabenosyn-5, at 834,064 to 836,328 15448

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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832,583 - -1.9
832,593 + -0.1
832,723 - +0.4
832,728 + +1.1
832,731 - -1.7
832,764 - -1.0
832,985 - -1.5
832,987 - +0.5
833,111 - +1.5
833,130 + 15447 mRNA_7079 0.12 +0.0
833,142 - 15447 mRNA_7079 0.13 -0.4
833,281 - 15447 mRNA_7079 0.29 -0.8
833,305 + 15447 mRNA_7079 0.31 -0.2
833,422 - 15447 mRNA_7079 0.44 +0.4
833,444 - 15447 mRNA_7079 0.47 -0.3
833,444 + 15447 mRNA_7079 0.47 -0.5
833,733 - 15447 mRNA_7079 0.79 +0.2
833,736 - 15447 mRNA_7079 0.79 -1.9
833,848 + +0.5
833,896 - +2.9
834,011 - -0.0
834,031 - -1.3

Or see this region's nucleotide sequence