Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7162

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15530 and 15531 are separated by 175 nucleotides mRNA_7162: 15530 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1,025,200 to 1,027,264 15530 mRNA_7163: 15531 - Hypothetical Protein, at 1,027,440 to 1,028,287 15531

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,024,809 - +0.4
1,024,856 + -0.3
1,025,252 - -1.5
1,025,552 + 15530 mRNA_7162 0.17 -0.6
1,025,554 + 15530 mRNA_7162 0.17 +0.6
1,025,566 - 15530 mRNA_7162 0.18 -0.1
1,026,294 + 15530 mRNA_7162 0.53 -0.9
1,026,310 - 15530 mRNA_7162 0.54 -0.3
1,026,584 - 15530 mRNA_7162 0.67 +1.8
1,026,719 + 15530 mRNA_7162 0.74 +0.0
1,026,939 - 15530 mRNA_7162 0.84 -1.0
1,027,073 - -0.4
1,027,086 - -0.3
1,027,379 - -0.7
1,027,620 - 15531 mRNA_7163 0.21 -1.0
1,027,631 + 15531 mRNA_7163 0.23 +0.1
1,027,774 + 15531 mRNA_7163 0.39 +0.1
1,028,081 + 15531 mRNA_7163 0.76 -0.6
1,028,202 - 15531 mRNA_7163 0.90 -0.4
1,028,203 - -2.0
1,028,204 + +0.1
1,028,208 - -0.9
1,028,214 + -1.5
1,028,214 + -1.2
1,028,216 + -0.9
1,028,224 - +1.0
1,028,239 + -0.3

Or see this region's nucleotide sequence