Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7164

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15531 and 15532 are separated by 141 nucleotides15532 and 15533 are separated by 114 nucleotides mRNA_7163: 15531 - Hypothetical Protein, at 1,027,440 to 1,028,287 15531 mRNA_7164: 15532 - K13117 DHX35 ATP-dependent RNA helicase DDX35, at 1,028,429 to 1,031,367 15532 mRNA_7165: 15533 - K01867 WARS, trpS tryptophanyl-tRNA synthetase, at 1,031,482 to 1,033,004 15533

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,027,620 - 15531 mRNA_7163 0.21 -1.0
1,027,631 + 15531 mRNA_7163 0.23 +0.1
1,027,774 + 15531 mRNA_7163 0.39 +0.1
1,028,081 + 15531 mRNA_7163 0.76 -0.6
1,028,202 - 15531 mRNA_7163 0.90 -0.4
1,028,203 - -2.0
1,028,204 + +0.1
1,028,208 - -0.9
1,028,214 + -1.5
1,028,214 + -1.2
1,028,216 + -0.9
1,028,224 - +1.0
1,028,239 + -0.3
1,028,380 + -0.4
1,028,390 + +1.0
1,028,409 - -0.2
1,028,416 + -0.2
1,028,472 - +0.5
1,028,485 + -1.4
1,028,513 + +0.1
1,028,528 + -0.6
1,028,528 - +2.5
1,028,672 - -0.1
1,028,688 + -1.6
1,028,924 + 15532 mRNA_7164 0.17 +1.8
1,029,009 + 15532 mRNA_7164 0.20 +0.1
1,029,195 - 15532 mRNA_7164 0.26 -0.2
1,029,405 + 15532 mRNA_7164 0.33 +0.0
1,029,865 + 15532 mRNA_7164 0.49 -0.1
1,030,007 + 15532 mRNA_7164 0.54 -1.9
1,030,124 - 15532 mRNA_7164 0.58 -0.4
1,030,556 + 15532 mRNA_7164 0.72 +1.2
1,030,690 + 15532 mRNA_7164 0.77 -2.4
1,030,871 - 15532 mRNA_7164 0.83 +0.0
1,031,019 - 15532 mRNA_7164 0.88 -0.2
1,031,046 - 15532 mRNA_7164 0.89 +0.6
1,031,165 - +0.2
1,031,303 - +0.6
1,031,309 + +0.9
1,031,454 + +0.5
1,031,454 + +2.9

Or see this region's nucleotide sequence