Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7197

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15564 and 15565 are separated by 507 nucleotides mRNA_7196: 15564 - KOG3329 RAN guanine nucleotide release factor, at 1,104,031 to 1,104,798 15564 mRNA_7197: 15565 - KOG0490 Transcription factor, contains HOX domain, at 1,105,306 to 1,105,458 15565

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,104,817 - +0.7
1,104,847 + -0.5
1,104,866 - -0.9
1,104,880 - +0.2
1,104,904 - -0.1
1,105,009 + +0.0
1,105,045 + +0.1
1,105,053 + +0.9
1,105,175 + +0.2
1,105,181 + +0.6
1,105,361 - 15565 mRNA_7197 0.36 -0.2
1,105,382 - 15565 mRNA_7197 0.50 -0.0
1,105,447 - -0.1
1,105,532 + +0.4
1,105,642 + +1.3
1,105,964 + -0.4
1,106,247 + -0.5

Or see this region's nucleotide sequence