Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7270

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15637 and 15638 are separated by 263 nucleotides15638 and 15639 are separated by 358 nucleotides mRNA_7269: 15637 - Hypothetical Protein, at 1,264,905 to 1,266,240 15637 mRNA_7270: 15638 - ProSiteProfiles-TEA domain profile.-PS51088, at 1,266,504 to 1,267,966 15638 mRNA_7271: 15639 - HMMPfam-TEA/ATTS domain family-PF01285,ProSiteProfiles-TEA domain profile.-PS51088, at 1,268,325 to 1,269,363 15639

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,265,582 - 15637 mRNA_7269 0.51 -0.3
1,265,662 - 15637 mRNA_7269 0.57 -0.6
1,265,841 - 15637 mRNA_7269 0.70 +0.6
1,265,851 + 15637 mRNA_7269 0.71 -0.7
1,265,951 - 15637 mRNA_7269 0.78 +1.1
1,265,951 - 15637 mRNA_7269 0.78 -1.6
1,265,976 - 15637 mRNA_7269 0.80 +1.4
1,265,994 - 15637 mRNA_7269 0.82 -0.5
1,266,009 - 15637 mRNA_7269 0.83 -2.8
1,266,020 + 15637 mRNA_7269 0.83 -0.1
1,266,033 - 15637 mRNA_7269 0.84 -0.9
1,266,119 + +0.6
1,266,381 - +1.2
1,266,431 + +0.1
1,266,552 - -1.3
1,266,570 - +0.5
1,266,589 + -0.4
1,266,607 - -1.3
1,266,715 - 15638 mRNA_7270 0.14 -0.2
1,266,723 - 15638 mRNA_7270 0.15 -0.7
1,267,018 + 15638 mRNA_7270 0.35 -2.0
1,267,021 - 15638 mRNA_7270 0.35 +0.8
1,267,315 - 15638 mRNA_7270 0.55 +0.3
1,267,745 - 15638 mRNA_7270 0.85 -0.5
1,267,758 + 15638 mRNA_7270 0.86 +0.1
1,267,767 - 15638 mRNA_7270 0.86 -0.6
1,267,860 - -1.6
1,267,879 - +1.3
1,267,890 - -1.4
1,267,906 - +0.5
1,268,038 - -0.1
1,268,039 + +1.4
1,268,181 + -0.8
1,268,181 + +1.4
1,268,181 + +0.3
1,268,201 - +0.1
1,268,231 - +1.4
1,268,348 - -0.6
1,268,351 + +0.1
1,268,355 + +0.9
1,268,365 + +1.4
1,268,369 - +0.1
1,268,462 + 15639 mRNA_7271 0.13 +1.4
1,268,542 + 15639 mRNA_7271 0.21 -0.9
1,268,587 - 15639 mRNA_7271 0.25 +0.4
1,268,693 + 15639 mRNA_7271 0.35 +1.4
1,268,723 - 15639 mRNA_7271 0.38 -2.0
1,268,769 - 15639 mRNA_7271 0.43 +1.1
1,268,771 + 15639 mRNA_7271 0.43 +1.5
1,268,893 + 15639 mRNA_7271 0.55 +1.2
1,268,895 - 15639 mRNA_7271 0.55 +0.1
1,268,896 + 15639 mRNA_7271 0.55 +0.4
1,268,896 + 15639 mRNA_7271 0.55 +0.6
1,268,914 + 15639 mRNA_7271 0.57 -0.1
1,268,917 - 15639 mRNA_7271 0.57 -0.3
1,268,921 + 15639 mRNA_7271 0.57 -2.3
1,268,931 + 15639 mRNA_7271 0.58 +1.6
1,268,958 - 15639 mRNA_7271 0.61 -1.4
1,268,965 + 15639 mRNA_7271 0.62 +0.3

Or see this region's nucleotide sequence