Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7302

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15669 and 15670 are separated by 489 nucleotides15670 and 15671 are separated by 156 nucleotides mRNA_7301: 15669 - Hypothetical Protein, at 1,346,160 to 1,348,267 15669 mRNA_7302: 15670 - Hypothetical Protein, at 1,348,757 to 1,350,807 15670 mRNA_7303: 15671 - KOG1269 SAM-dependent methyltransferases, at 1,350,964 to 1,351,884 15671

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,347,817 + 15669 mRNA_7301 0.79 -0.6
1,347,854 + 15669 mRNA_7301 0.80 +0.5
1,347,855 + 15669 mRNA_7301 0.80 -0.1
1,348,083 + -0.8
1,348,139 + +2.1
1,348,158 + -0.9
1,348,230 - +0.5
1,348,234 + +0.5
1,348,241 + -0.4
1,348,385 - -0.3
1,348,404 - +2.8
1,348,544 + -0.3
1,348,592 + -0.1
1,348,690 + -1.3
1,348,752 + +0.6
1,348,792 + +0.6
1,348,831 - -0.7
1,348,833 + -0.4
1,348,837 - -0.7
1,348,848 - +0.3
1,348,850 + -0.5
1,348,871 - +0.8
1,348,921 + -2.4
1,348,962 - 15670 mRNA_7302 0.10 -0.0
1,349,026 + 15670 mRNA_7302 0.13 +1.3
1,349,099 + 15670 mRNA_7302 0.17 +0.3
1,349,116 + 15670 mRNA_7302 0.18 -0.7
1,349,134 + 15670 mRNA_7302 0.18 -0.5
1,349,263 + 15670 mRNA_7302 0.25 -1.0
1,349,264 + 15670 mRNA_7302 0.25 -0.3
1,349,267 - 15670 mRNA_7302 0.25 -0.3
1,349,268 + 15670 mRNA_7302 0.25 +0.5
1,349,289 + 15670 mRNA_7302 0.26 +0.6
1,349,292 + 15670 mRNA_7302 0.26 -2.3
1,349,349 + 15670 mRNA_7302 0.29 -0.4
1,349,420 - 15670 mRNA_7302 0.32 -0.5
1,349,458 + 15670 mRNA_7302 0.34 +0.5
1,349,474 - 15670 mRNA_7302 0.35 -1.0
1,349,522 - 15670 mRNA_7302 0.37 -0.0
1,349,523 + 15670 mRNA_7302 0.37 -0.3
1,349,747 - 15670 mRNA_7302 0.48 +1.7
1,349,858 - 15670 mRNA_7302 0.54 +0.0
1,349,868 - 15670 mRNA_7302 0.54 -0.2
1,349,909 + 15670 mRNA_7302 0.56 -0.1
1,349,971 + 15670 mRNA_7302 0.59 -0.8
1,350,020 + 15670 mRNA_7302 0.62 -0.9
1,350,023 - 15670 mRNA_7302 0.62 +2.4
1,350,036 - 15670 mRNA_7302 0.62 +0.1
1,350,041 + 15670 mRNA_7302 0.63 -0.9
1,350,203 + 15670 mRNA_7302 0.71 -0.4
1,350,265 - 15670 mRNA_7302 0.74 -0.7
1,350,310 + 15670 mRNA_7302 0.76 +0.9
1,350,313 - 15670 mRNA_7302 0.76 +0.2
1,350,490 - 15670 mRNA_7302 0.84 +0.5
1,350,504 + 15670 mRNA_7302 0.85 +1.9
1,350,542 - 15670 mRNA_7302 0.87 -1.1
1,350,546 + 15670 mRNA_7302 0.87 +0.4
1,350,623 + +0.9
1,350,623 + -1.5
1,350,623 + +0.6
1,350,641 - -1.1
1,350,736 - -0.3
1,350,770 + -0.7
1,350,898 + +0.4
1,350,918 - +1.1
1,350,919 - -0.6
1,350,927 + -0.2
1,351,008 + +2.0
1,351,024 - -0.2
1,351,090 + 15671 mRNA_7303 0.14 +0.3
1,351,196 - 15671 mRNA_7303 0.25 -0.6
1,351,252 - 15671 mRNA_7303 0.31 -0.4
1,351,334 - 15671 mRNA_7303 0.40 +2.1
1,351,338 + 15671 mRNA_7303 0.41 -0.5
1,351,575 - 15671 mRNA_7303 0.66 -0.0
1,351,588 - 15671 mRNA_7303 0.68 -0.3

Or see this region's nucleotide sequence