Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7305

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15672 and 15673 are separated by 194 nucleotides15673 and 15674 are separated by 834 nucleotides mRNA_7304: 15672 - Hypothetical Protein, at 1,352,479 to 1,355,080 15672 mRNA_7305: 15673 - Hypothetical Protein, at 1,355,275 to 1,355,712 15673 mRNA_7306: 15674 - KOG1217 Fibrillins and related proteins containing Ca2+-binding EGF-like domains, at 1,356,547 to 1,358,907 15674

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,354,277 - 15672 mRNA_7304 0.69 +1.9
1,354,334 + 15672 mRNA_7304 0.71 -0.7
1,354,493 + 15672 mRNA_7304 0.77 +0.0
1,354,787 + 15672 mRNA_7304 0.89 +1.9
1,354,793 - 15672 mRNA_7304 0.89 -0.3
1,354,794 - 15672 mRNA_7304 0.89 +1.0
1,354,923 + +0.2
1,354,966 - -0.4
1,354,980 + +1.6
1,355,030 + +0.3
1,355,054 - +1.3
1,355,179 + +0.3
1,355,185 + -1.1
1,355,393 - 15673 mRNA_7305 0.27 -0.5
1,355,434 - 15673 mRNA_7305 0.36 +1.9
1,355,434 - 15673 mRNA_7305 0.36 +0.5
1,355,447 + 15673 mRNA_7305 0.39 -1.4
1,355,492 + 15673 mRNA_7305 0.50 -0.4
1,355,492 + 15673 mRNA_7305 0.50 +0.8
1,355,495 - 15673 mRNA_7305 0.50 -0.2
1,355,587 + 15673 mRNA_7305 0.71 +0.9
1,355,591 + 15673 mRNA_7305 0.72 +1.6
1,355,603 - 15673 mRNA_7305 0.75 +0.3
1,355,614 - 15673 mRNA_7305 0.77 -0.5
1,355,619 - 15673 mRNA_7305 0.79 +0.7
1,355,620 + 15673 mRNA_7305 0.79 -0.4
1,355,630 - 15673 mRNA_7305 0.81 -0.3
1,355,741 - +0.2
1,355,863 + -1.2
1,356,030 - -0.9
1,356,064 - +0.4
1,356,068 + +0.0
1,356,087 + +0.4
1,356,168 + +1.1
1,356,180 - -1.2
1,356,186 + -0.0
1,356,199 + -0.7
1,356,235 - +0.3
1,356,318 + +0.5
1,356,554 + +1.1
1,356,577 + -0.7
1,356,616 + +0.4

Or see this region's nucleotide sequence