Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7319

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_7319: 15687 - Hypothetical Protein, at 1,388,074 to 1,389,867 15687

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,387,097 - -1.6
1,387,118 + -0.7
1,387,126 - +0.1
1,387,158 - -0.9
1,387,160 - -1.6
1,387,232 - +0.1
1,387,245 - -1.4
1,387,301 - -0.1
1,387,308 + -1.6
1,387,319 - +0.5
1,387,507 + +1.6
1,387,598 + +2.1
1,387,599 + +1.8
1,387,648 + -1.1
1,387,732 + +0.6
1,387,759 - +0.9
1,387,765 - +0.3
1,387,847 - -1.6
1,387,850 - -0.1
1,387,883 - -0.3
1,387,883 - -1.9
1,388,044 - +0.8
1,388,050 - +0.3
1,388,107 - -0.3
1,388,191 - +0.1
1,388,195 - -0.8
1,388,371 - 15687 mRNA_7319 0.17 -0.6
1,388,377 - 15687 mRNA_7319 0.17 +0.0
1,388,377 - 15687 mRNA_7319 0.17 +1.2
1,388,513 - 15687 mRNA_7319 0.24 -0.1
1,388,583 - 15687 mRNA_7319 0.28 +0.3
1,388,653 - 15687 mRNA_7319 0.32 -0.1
1,388,724 - 15687 mRNA_7319 0.36 -1.6
1,388,758 - 15687 mRNA_7319 0.38 +0.4
1,388,790 - 15687 mRNA_7319 0.40 -0.5
1,388,820 - 15687 mRNA_7319 0.42 +1.3
1,388,911 - 15687 mRNA_7319 0.47 -2.4
1,388,927 + 15687 mRNA_7319 0.48 +0.1
1,388,979 - 15687 mRNA_7319 0.50 +1.7
1,389,046 - 15687 mRNA_7319 0.54 +0.3
1,389,085 - 15687 mRNA_7319 0.56 +0.5
1,389,119 - 15687 mRNA_7319 0.58 +0.2
1,389,139 - 15687 mRNA_7319 0.59 +0.2
1,389,212 - 15687 mRNA_7319 0.63 +0.6
1,389,234 - 15687 mRNA_7319 0.65 +1.4
1,389,324 - 15687 mRNA_7319 0.70 +2.2
1,389,338 - 15687 mRNA_7319 0.70 +0.4
1,389,479 - 15687 mRNA_7319 0.78 +0.2
1,389,523 - 15687 mRNA_7319 0.81 +0.7
1,389,634 - 15687 mRNA_7319 0.87 -0.6
1,389,635 + 15687 mRNA_7319 0.87 +0.3
1,389,644 - 15687 mRNA_7319 0.88 +0.1
1,389,665 - 15687 mRNA_7319 0.89 +0.2
1,389,722 - +0.6
1,389,757 - +0.5
1,389,820 + +0.1
1,389,827 + +1.0
1,389,873 - -0.5
1,389,873 - +1.9
1,389,887 - +0.6
1,389,966 - -0.8
1,390,024 + +0.6
1,390,025 + -1.4
1,390,027 - +0.2
1,390,134 - +1.9
1,390,146 - -1.2
1,390,160 - +0.0
1,390,163 - +2.3
1,390,167 - +0.7
1,390,182 - +1.3
1,390,202 - +0.1
1,390,214 + +1.5
1,390,216 - +1.2
1,390,240 + +0.4
1,390,243 + +0.3
1,390,250 + +1.6
1,390,297 + +3.0
1,390,324 - +0.9
1,390,327 + -1.7
1,390,327 + +1.2
1,390,357 + -0.3
1,390,360 - +2.7
1,390,369 - +1.3
1,390,370 + +1.4
1,390,375 + -1.7
1,390,376 - +0.4
1,390,378 - -0.1
1,390,390 - -0.1
1,390,390 - +0.9
1,390,390 - +0.1
1,390,390 - -0.2
1,390,390 - +0.6
1,390,390 - +0.8
1,390,419 + +3.0
1,390,474 + -0.5
1,390,492 - +1.1
1,390,503 - +0.2
1,390,517 - +1.5
1,390,519 - -0.5
1,390,519 - -0.2
1,390,519 - -0.6
1,390,543 - +0.0
1,390,617 - +0.4
1,390,642 - +0.7
1,390,650 - +0.9
1,390,663 - -2.7
1,390,663 + +0.8
1,390,704 - -0.3
1,390,723 - -1.1
1,390,740 - +0.2
1,390,755 - +2.7
1,390,763 - -0.1
1,390,769 - -0.4
1,390,770 - +0.8
1,390,775 - -0.5
1,390,783 - +0.1
1,390,783 - -0.3
1,390,783 - +1.5
1,390,786 - +0.9
1,390,796 - -0.5

Or see this region's nucleotide sequence